Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 MPI-205ENST00000562606 1052 ntTSL 3 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.05■□□□□ 0.96
SH3RF1Q7Z6J0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 AL390961.4-201ENST00000623958 2535 ntBASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.04■□□□□ 0.96
SH3RF1Q7Z6J0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
SH3RF1Q7Z6J0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 TSPY19P-201ENST00000418461 509 ntBASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 TSPY18P-201ENST00000441642 509 ntBASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 AL160237.2-201ENST00000556165 472 ntBASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms