Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.25■□□□□ 0.99
SF3A1Q15459 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SF3A1Q15459 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SF3A1Q15459 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.25■□□□□ 0.99
SF3A1Q15459 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.25■□□□□ 0.99
SF3A1Q15459 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SF3A1Q15459 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SF3A1Q15459 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SF3A1Q15459 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.24■□□□□ 0.99
SF3A1Q15459 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.24■□□□□ 0.99
SF3A1Q15459 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.24■□□□□ 0.99
SF3A1Q15459 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.24■□□□□ 0.99
SF3A1Q15459 TSPY7P-201ENST00000431358 1114 ntBASIC21.24■□□□□ 0.99
SF3A1Q15459 MCCD1P1-208ENST00000445732 328 ntBASIC21.24■□□□□ 0.99
SF3A1Q15459 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.24■□□□□ 0.99
SF3A1Q15459 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.24■□□□□ 0.99
SF3A1Q15459 CA15P1-201ENST00000481698 905 ntBASIC21.24■□□□□ 0.99
SF3A1Q15459 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.24■□□□□ 0.99
SF3A1Q15459 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.24■□□□□ 0.99
SF3A1Q15459 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.24■□□□□ 0.99
SF3A1Q15459 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.24■□□□□ 0.99
SF3A1Q15459 AC135776.1-201ENST00000319817 2481 ntBASIC21.24■□□□□ 0.99
SF3A1Q15459 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
SF3A1Q15459 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SF3A1Q15459 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.23■□□□□ 0.99
SF3A1Q15459 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.23■□□□□ 0.99
SF3A1Q15459 MYLKP1-201ENST00000509077 1580 ntBASIC21.23■□□□□ 0.99
SF3A1Q15459 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.23■□□□□ 0.99
SF3A1Q15459 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.23■□□□□ 0.99
SF3A1Q15459 MIR564-202ENST00000385049 94 ntBASIC21.23■□□□□ 0.99
SF3A1Q15459 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.23■□□□□ 0.99
SF3A1Q15459 MIR4674-201ENST00000582457 87 ntBASIC21.23■□□□□ 0.99
SF3A1Q15459 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SF3A1Q15459 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.23■□□□□ 0.99
SF3A1Q15459 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.23■□□□□ 0.99
SF3A1Q15459 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.23■□□□□ 0.99
SF3A1Q15459 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SF3A1Q15459 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.23■□□□□ 0.99
SF3A1Q15459 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.23■□□□□ 0.99
SF3A1Q15459 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SF3A1Q15459 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SF3A1Q15459 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.22■□□□□ 0.99
SF3A1Q15459 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 NOC2LP2-201ENST00000407594 1944 ntBASIC21.22■□□□□ 0.99
SF3A1Q15459 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.22■□□□□ 0.99
SF3A1Q15459 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 RBM17P1-201ENST00000453646 1190 ntBASIC21.22■□□□□ 0.99
SF3A1Q15459 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.22■□□□□ 0.99
SF3A1Q15459 KRT18P41-201ENST00000518924 1277 ntBASIC21.22■□□□□ 0.99
SF3A1Q15459 AP005242.2-201ENST00000580065 1175 ntBASIC21.22■□□□□ 0.99
SF3A1Q15459 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.22■□□□□ 0.99
SF3A1Q15459 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms