Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.44■□□□□ 0.38
RAE1P78406 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.44■□□□□ 0.38
RAE1P78406 MIR3180-4-201ENST00000582223 153 ntBASIC17.44■□□□□ 0.38
RAE1P78406 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.44■□□□□ 0.38
RAE1P78406 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 AC010240.3-201ENST00000607688 395 ntBASIC17.44■□□□□ 0.38
RAE1P78406 LETM1P2-201ENST00000597330 2178 ntBASIC17.44■□□□□ 0.38
RAE1P78406 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.44■□□□□ 0.38
RAE1P78406 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.44■□□□□ 0.38
RAE1P78406 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RAE1P78406 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.43■□□□□ 0.38
RAE1P78406 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 FLJ13224-201ENST00000313737 1514 ntBASIC17.43■□□□□ 0.38
RAE1P78406 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 AC020763.4-201ENST00000623414 4170 ntBASIC17.43■□□□□ 0.38
RAE1P78406 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
RAE1P78406 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 HMGA1P5-201ENST00000412453 271 ntBASIC17.43■□□□□ 0.38
RAE1P78406 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
RAE1P78406 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.43■□□□□ 0.38
RAE1P78406 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.43■□□□□ 0.38
RAE1P78406 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.43■□□□□ 0.38
RAE1P78406 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.43■□□□□ 0.38
RAE1P78406 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 AC024243.1-201ENST00000609234 778 ntBASIC17.43■□□□□ 0.38
RAE1P78406 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.43■□□□□ 0.38
RAE1P78406 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RAE1P78406 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
RAE1P78406 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 LINC01568-207ENST00000641790 1380 ntBASIC17.42■□□□□ 0.38
RAE1P78406 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
RAE1P78406 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.42■□□□□ 0.38
RAE1P78406 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.42■□□□□ 0.38
RAE1P78406 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
RAE1P78406 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RAE1P78406 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms