Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TPM4P67936 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TPM4P67936 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.62■□□□□ 0.89
TPM4P67936 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TPM4P67936 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TPM4P67936 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TPM4P67936 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.62■□□□□ 0.89
TPM4P67936 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TPM4P67936 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.62■□□□□ 0.89
TPM4P67936 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.62■□□□□ 0.89
TPM4P67936 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TPM4P67936 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
TPM4P67936 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.61■□□□□ 0.89
TPM4P67936 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.61■□□□□ 0.89
TPM4P67936 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.61■□□□□ 0.89
TPM4P67936 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.61■□□□□ 0.89
TPM4P67936 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.61■□□□□ 0.89
TPM4P67936 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.61■□□□□ 0.89
TPM4P67936 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.61■□□□□ 0.89
TPM4P67936 AC131212.4-201ENST00000623606 975 ntBASIC20.61■□□□□ 0.89
TPM4P67936 AC133041.1-202ENST00000642053 222 ntBASIC20.61■□□□□ 0.89
TPM4P67936 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.61■□□□□ 0.89
TPM4P67936 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TPM4P67936 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TPM4P67936 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TPM4P67936 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.6■□□□□ 0.89
TPM4P67936 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TPM4P67936 RCC2P3-201ENST00000418112 1537 ntBASIC20.6■□□□□ 0.89
TPM4P67936 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
TPM4P67936 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
TPM4P67936 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.6■□□□□ 0.89
TPM4P67936 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.6■□□□□ 0.89
TPM4P67936 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.6■□□□□ 0.89
TPM4P67936 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.6■□□□□ 0.89
TPM4P67936 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.6■□□□□ 0.89
TPM4P67936 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TPM4P67936 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TPM4P67936 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.59■□□□□ 0.89
TPM4P67936 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.59■□□□□ 0.89
TPM4P67936 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.59■□□□□ 0.89
TPM4P67936 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
TPM4P67936 HTR7P1-201ENST00000538670 1336 ntBASIC20.59■□□□□ 0.89
TPM4P67936 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.59■□□□□ 0.89
TPM4P67936 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.59■□□□□ 0.89
TPM4P67936 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.59■□□□□ 0.89
TPM4P67936 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.59■□□□□ 0.89
TPM4P67936 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TPM4P67936 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TPM4P67936 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.59■□□□□ 0.89
TPM4P67936 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TPM4P67936 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
TPM4P67936 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.89
TPM4P67936 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms