Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.21■□□□□ 0.67
HDAC4P56524 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HDAC4P56524 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 LIN28AP1-201ENST00000429574 405 ntBASIC19.21■□□□□ 0.67
HDAC4P56524 AL137013.1-201ENST00000432946 1228 ntBASIC19.21■□□□□ 0.67
HDAC4P56524 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.21■□□□□ 0.67
HDAC4P56524 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.21■□□□□ 0.67
HDAC4P56524 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.21■□□□□ 0.67
HDAC4P56524 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HDAC4P56524 AC010240.3-201ENST00000607688 395 ntBASIC19.21■□□□□ 0.67
HDAC4P56524 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.21■□□□□ 0.67
HDAC4P56524 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HDAC4P56524 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HDAC4P56524 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.2■□□□□ 0.66
HDAC4P56524 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.2■□□□□ 0.66
HDAC4P56524 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.2■□□□□ 0.66
HDAC4P56524 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDAC4P56524 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.2■□□□□ 0.66
HDAC4P56524 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HDAC4P56524 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HDAC4P56524 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.19■□□□□ 0.66
HDAC4P56524 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 ESPNP-201ENST00000270691 2015 ntBASIC19.19■□□□□ 0.66
HDAC4P56524 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HDAC4P56524 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 MIR149-201ENST00000384879 89 ntBASIC19.19■□□□□ 0.66
HDAC4P56524 ATP5G1P1-201ENST00000448724 379 ntBASIC19.19■□□□□ 0.66
HDAC4P56524 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.19■□□□□ 0.66
HDAC4P56524 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.19■□□□□ 0.66
HDAC4P56524 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.19■□□□□ 0.66
HDAC4P56524 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.19■□□□□ 0.66
HDAC4P56524 MIR3180-4-201ENST00000582223 153 ntBASIC19.19■□□□□ 0.66
HDAC4P56524 AL023973.1-201ENST00000624619 620 ntBASIC19.19■□□□□ 0.66
HDAC4P56524 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
HDAC4P56524 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.19■□□□□ 0.66
HDAC4P56524 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDAC4P56524 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HDAC4P56524 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.18■□□□□ 0.66
HDAC4P56524 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 AC009102.3-201ENST00000623118 1491 ntBASIC19.18■□□□□ 0.66
HDAC4P56524 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HDAC4P56524 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 AP000523.1-201ENST00000398242 1049 ntBASIC19.18■□□□□ 0.66
HDAC4P56524 KRT18P57-201ENST00000443599 1254 ntBASIC19.18■□□□□ 0.66
HDAC4P56524 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.18■□□□□ 0.66
HDAC4P56524 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
HDAC4P56524 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.18■□□□□ 0.66
HDAC4P56524 GCSHP2-201ENST00000560971 527 ntBASIC19.18■□□□□ 0.66
HDAC4P56524 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.18■□□□□ 0.66
HDAC4P56524 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.18■□□□□ 0.66
HDAC4P56524 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
HDAC4P56524 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
HDAC4P56524 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.18■□□□□ 0.66
HDAC4P56524 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms