Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
FOXA3P55318 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
FOXA3P55318 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA3P55318 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
FOXA3P55318 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 KRT8P45-201ENST00000414328 1447 ntBASIC13.81□□□□□ -0.2
FOXA3P55318 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
FOXA3P55318 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
FOXA3P55318 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 CYP2T1P-201ENST00000432607 1285 ntBASIC13.81□□□□□ -0.2
FOXA3P55318 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 NTF6G-201ENST00000591094 616 ntBASIC13.81□□□□□ -0.2
FOXA3P55318 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 RAP2CP1-201ENST00000605103 478 ntBASIC13.81□□□□□ -0.2
FOXA3P55318 AC011767.1-201ENST00000617410 1153 ntBASIC13.81□□□□□ -0.2
FOXA3P55318 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 AC008556.1-201ENST00000610908 2040 ntBASIC13.81□□□□□ -0.2
FOXA3P55318 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA3P55318 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
FOXA3P55318 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA3P55318 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA3P55318 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
FOXA3P55318 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA3P55318 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
FOXA3P55318 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
FOXA3P55318 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
FOXA3P55318 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
FOXA3P55318 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC13.8□□□□□ -0.2
FOXA3P55318 TSPY23P-201ENST00000440136 739 ntBASIC13.8□□□□□ -0.2
FOXA3P55318 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
FOXA3P55318 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC13.8□□□□□ -0.2
FOXA3P55318 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA3P55318 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC13.8□□□□□ -0.2
FOXA3P55318 REXO1L9P-201ENST00000604264 2108 ntBASIC13.8□□□□□ -0.2
FOXA3P55318 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 AC011676.5-201ENST00000624864 2660 ntBASIC13.8□□□□□ -0.2
FOXA3P55318 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
FOXA3P55318 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA3P55318 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
FOXA3P55318 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA3P55318 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA3P55318 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
FOXA3P55318 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms