Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC25.37■■□□□ 1.65
MSH6P52701 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
MSH6P52701 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC25.37■■□□□ 1.65
MSH6P52701 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC25.36■■□□□ 1.65
MSH6P52701 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH6P52701 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC25.36■■□□□ 1.65
MSH6P52701 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
MSH6P52701 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC25.36■■□□□ 1.65
MSH6P52701 MIR770-201ENST00000390219 98 ntBASIC25.36■■□□□ 1.65
MSH6P52701 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC25.36■■□□□ 1.65
MSH6P52701 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
MSH6P52701 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
MSH6P52701 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH6P52701 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH6P52701 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC25.35■■□□□ 1.65
MSH6P52701 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH6P52701 FEM1AP3-201ENST00000403722 1741 ntBASIC25.35■■□□□ 1.65
MSH6P52701 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH6P52701 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH6P52701 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC25.35■■□□□ 1.65
MSH6P52701 LHX6-205ENST00000464484 666 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH6P52701 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC25.35■■□□□ 1.65
MSH6P52701 CYGB-205ENST00000590175 830 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH6P52701 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MSH6P52701 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH6P52701 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH6P52701 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 AL163051.1-201ENST00000569214 1512 ntBASIC25.34■■□□□ 1.65
MSH6P52701 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
MSH6P52701 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC25.34■■□□□ 1.65
MSH6P52701 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC25.34■■□□□ 1.65
MSH6P52701 AP002472.1-201ENST00000577490 586 ntBASIC25.34■■□□□ 1.65
MSH6P52701 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC25.34■■□□□ 1.65
MSH6P52701 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC25.34■■□□□ 1.65
MSH6P52701 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC25.34■■□□□ 1.65
MSH6P52701 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
MSH6P52701 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH6P52701 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH6P52701 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH6P52701 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH6P52701 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
MSH6P52701 CNN2P11-201ENST00000429351 262 ntBASIC25.33■■□□□ 1.65
MSH6P52701 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC25.33■■□□□ 1.65
MSH6P52701 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC25.33■■□□□ 1.65
MSH6P52701 AC106028.4-201ENST00000614509 607 ntBASIC25.33■■□□□ 1.65
MSH6P52701 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
MSH6P52701 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH6P52701 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC25.33■■□□□ 1.65
MSH6P52701 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
MSH6P52701 AC002310.6-201ENST00000624451 1377 ntBASIC25.33■■□□□ 1.65
MSH6P52701 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH6P52701 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH6P52701 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH6P52701 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC25.33■■□□□ 1.65
MSH6P52701 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.64
MSH6P52701 SOD2-201ENST00000337404 991 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH6P52701 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH6P52701 MTCL1P1-201ENST00000446207 792 ntBASIC25.32■■□□□ 1.64
MSH6P52701 COX20P2-201ENST00000452636 358 ntBASIC25.32■■□□□ 1.64
MSH6P52701 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC25.32■■□□□ 1.64
MSH6P52701 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC25.32■■□□□ 1.64
MSH6P52701 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC25.32■■□□□ 1.64
MSH6P52701 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 SPCS2P1-201ENST00000561636 679 ntBASIC25.32■■□□□ 1.64
MSH6P52701 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH6P52701 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC25.32■■□□□ 1.64
MSH6P52701 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC25.32■■□□□ 1.64
MSH6P52701 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
MSH6P52701 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
MSH6P52701 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH6P52701 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
MSH6P52701 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 WBP2-203ENST00000433525 928 ntTSL 2 BASIC25.31■■□□□ 1.64
MSH6P52701 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC25.31■■□□□ 1.64
MSH6P52701 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC25.31■■□□□ 1.64
MSH6P52701 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC25.31■■□□□ 1.64
MSH6P52701 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC25.31■■□□□ 1.64
MSH6P52701 AC009154.2-201ENST00000621177 724 ntBASIC25.31■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms