Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
USP11P51784 ESPNP-201ENST00000270691 2015 ntBASIC20.74■□□□□ 0.91
USP11P51784 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.74■□□□□ 0.91
USP11P51784 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.74■□□□□ 0.91
USP11P51784 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
USP11P51784 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.74■□□□□ 0.91
USP11P51784 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.74■□□□□ 0.91
USP11P51784 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.74■□□□□ 0.91
USP11P51784 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.74■□□□□ 0.91
USP11P51784 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.74■□□□□ 0.91
USP11P51784 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP11P51784 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
USP11P51784 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.73■□□□□ 0.91
USP11P51784 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
USP11P51784 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.73■□□□□ 0.91
USP11P51784 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.73■□□□□ 0.91
USP11P51784 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP11P51784 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.73■□□□□ 0.91
USP11P51784 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
USP11P51784 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 AP003733.1-201ENST00000491725 852 ntBASIC20.73■□□□□ 0.91
USP11P51784 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.73■□□□□ 0.91
USP11P51784 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.73■□□□□ 0.91
USP11P51784 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.73■□□□□ 0.91
USP11P51784 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP11P51784 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
USP11P51784 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.72■□□□□ 0.91
USP11P51784 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
USP11P51784 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.72■□□□□ 0.91
USP11P51784 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
USP11P51784 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
USP11P51784 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.72■□□□□ 0.91
USP11P51784 IGHGP-201ENST00000390555 1178 ntBASIC20.72■□□□□ 0.91
USP11P51784 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.72■□□□□ 0.91
USP11P51784 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.72■□□□□ 0.91
USP11P51784 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.72■□□□□ 0.91
USP11P51784 AC011498.5-201ENST00000592027 486 ntBASIC20.72■□□□□ 0.91
USP11P51784 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
USP11P51784 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.72■□□□□ 0.91
USP11P51784 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP11P51784 IER3-202ENST00000376377 1350 ntBASIC20.72■□□□□ 0.91
USP11P51784 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
USP11P51784 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.71■□□□□ 0.91
USP11P51784 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.71■□□□□ 0.91
USP11P51784 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.71■□□□□ 0.91
USP11P51784 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.71■□□□□ 0.91
USP11P51784 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.71■□□□□ 0.91
USP11P51784 RNF126P1-202ENST00000569893 925 ntBASIC20.71■□□□□ 0.91
USP11P51784 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.71■□□□□ 0.91
USP11P51784 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.71■□□□□ 0.91
USP11P51784 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP11P51784 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms