Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.31■□□□□ 0.68
LIG3P49916 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 ECEL1P3-201ENST00000427961 737 ntBASIC19.31■□□□□ 0.68
LIG3P49916 AC008040.2-201ENST00000461049 708 ntBASIC19.31■□□□□ 0.68
LIG3P49916 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.31■□□□□ 0.68
LIG3P49916 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.31■□□□□ 0.68
LIG3P49916 DGCR10-201ENST00000609839 495 ntBASIC19.31■□□□□ 0.68
LIG3P49916 AC133561.5-201ENST00000635547 218 ntBASIC19.31■□□□□ 0.68
LIG3P49916 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.31■□□□□ 0.68
LIG3P49916 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
LIG3P49916 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LIG3P49916 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.31■□□□□ 0.68
LIG3P49916 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LIG3P49916 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.3■□□□□ 0.68
LIG3P49916 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LIG3P49916 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.3■□□□□ 0.68
LIG3P49916 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.3■□□□□ 0.68
LIG3P49916 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
LIG3P49916 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.3■□□□□ 0.68
LIG3P49916 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.3■□□□□ 0.68
LIG3P49916 FITM1-202ENST00000559294 800 ntBASIC19.3■□□□□ 0.68
LIG3P49916 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.3■□□□□ 0.68
LIG3P49916 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.3■□□□□ 0.68
LIG3P49916 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.3■□□□□ 0.68
LIG3P49916 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 KRT8P9-201ENST00000558927 1449 ntBASIC19.3■□□□□ 0.68
LIG3P49916 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIG3P49916 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.3■□□□□ 0.68
LIG3P49916 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIG3P49916 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.3■□□□□ 0.68
LIG3P49916 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
LIG3P49916 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIG3P49916 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.29■□□□□ 0.68
LIG3P49916 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.29■□□□□ 0.68
LIG3P49916 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.29■□□□□ 0.68
LIG3P49916 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
LIG3P49916 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.29■□□□□ 0.68
LIG3P49916 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.29■□□□□ 0.68
LIG3P49916 AC091390.4-202ENST00000476426 537 ntBASIC19.29■□□□□ 0.68
LIG3P49916 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.29■□□□□ 0.68
LIG3P49916 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.29■□□□□ 0.68
LIG3P49916 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.29■□□□□ 0.68
LIG3P49916 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
LIG3P49916 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.29■□□□□ 0.68
LIG3P49916 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.29■□□□□ 0.68
LIG3P49916 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIG3P49916 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
LIG3P49916 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms