Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.01□□□□□ -0.01
CDX1P47902 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.01□□□□□ -0.01
CDX1P47902 AP000525.1-201ENST00000608286 694 ntBASIC15.01□□□□□ -0.01
CDX1P47902 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.01□□□□□ -0.01
CDX1P47902 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.01□□□□□ -0.01
CDX1P47902 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.01□□□□□ -0.01
CDX1P47902 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.01□□□□□ -0.01
CDX1P47902 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDX1P47902 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.01□□□□□ -0.01
CDX1P47902 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15□□□□□ -0.01
CDX1P47902 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CDX1P47902 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15□□□□□ -0.01
CDX1P47902 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CDX1P47902 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
CDX1P47902 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15□□□□□ -0.01
CDX1P47902 RCC2P6-201ENST00000526625 1557 ntBASIC15□□□□□ -0.01
CDX1P47902 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CDX1P47902 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15□□□□□ -0.01
CDX1P47902 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15□□□□□ -0.01
CDX1P47902 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15□□□□□ -0.01
CDX1P47902 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC15□□□□□ -0.01
CDX1P47902 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15□□□□□ -0.01
CDX1P47902 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15□□□□□ -0.01
CDX1P47902 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15□□□□□ -0.01
CDX1P47902 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CDX1P47902 AC097493.4-201ENST00000641197 219 ntBASIC15□□□□□ -0.01
CDX1P47902 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15□□□□□ -0.01
CDX1P47902 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15□□□□□ -0.01
CDX1P47902 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
CDX1P47902 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC14.99□□□□□ -0.01
CDX1P47902 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.99□□□□□ -0.01
CDX1P47902 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
CDX1P47902 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
CDX1P47902 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC14.99□□□□□ -0.01
CDX1P47902 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC14.99□□□□□ -0.01
CDX1P47902 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 AP005242.2-201ENST00000580065 1175 ntBASIC14.99□□□□□ -0.01
CDX1P47902 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC14.99□□□□□ -0.01
CDX1P47902 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 AP000692.2-201ENST00000608391 879 ntBASIC14.99□□□□□ -0.01
CDX1P47902 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 AC011298.2-201ENST00000617989 482 ntBASIC14.99□□□□□ -0.01
CDX1P47902 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.99□□□□□ -0.01
CDX1P47902 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CDX1P47902 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms