Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CIITAP33076 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.67■□□□□ 0.9
CIITAP33076 KRT8P26-201ENST00000534154 1276 ntBASIC20.67■□□□□ 0.9
CIITAP33076 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CIITAP33076 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.67■□□□□ 0.9
CIITAP33076 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.67■□□□□ 0.9
CIITAP33076 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CIITAP33076 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CIITAP33076 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.67■□□□□ 0.9
CIITAP33076 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 Z83836.1-201ENST00000624605 1642 ntBASIC20.67■□□□□ 0.9
CIITAP33076 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CIITAP33076 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CIITAP33076 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.66■□□□□ 0.9
CIITAP33076 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 TSPY22P-201ENST00000427496 604 ntBASIC20.66■□□□□ 0.9
CIITAP33076 UPK3BP1-201ENST00000428678 509 ntBASIC20.66■□□□□ 0.9
CIITAP33076 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.66■□□□□ 0.9
CIITAP33076 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.66■□□□□ 0.9
CIITAP33076 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CIITAP33076 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.66■□□□□ 0.9
CIITAP33076 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.66■□□□□ 0.9
CIITAP33076 AC016734.2-201ENST00000624325 1377 ntBASIC20.66■□□□□ 0.9
CIITAP33076 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CIITAP33076 ESPNP-201ENST00000270691 2015 ntBASIC20.66■□□□□ 0.9
CIITAP33076 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CIITAP33076 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.66■□□□□ 0.9
CIITAP33076 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.66■□□□□ 0.9
CIITAP33076 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CIITAP33076 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.65■□□□□ 0.9
CIITAP33076 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.65■□□□□ 0.9
CIITAP33076 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.65■□□□□ 0.9
CIITAP33076 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.65■□□□□ 0.9
CIITAP33076 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.65■□□□□ 0.9
CIITAP33076 AL121672.3-201ENST00000608644 468 ntBASIC20.65■□□□□ 0.9
CIITAP33076 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.65■□□□□ 0.9
CIITAP33076 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
CIITAP33076 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CIITAP33076 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.9
CIITAP33076 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.64■□□□□ 0.9
CIITAP33076 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CIITAP33076 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
CIITAP33076 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.64■□□□□ 0.9
CIITAP33076 AL353692.3-201ENST00000407031 1396 ntBASIC20.64■□□□□ 0.89
CIITAP33076 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
CIITAP33076 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.64■□□□□ 0.89
CIITAP33076 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.64■□□□□ 0.89
CIITAP33076 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.64■□□□□ 0.89
CIITAP33076 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
CIITAP33076 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.64■□□□□ 0.89
CIITAP33076 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 AC069148.1-201ENST00000608741 768 ntBASIC20.64■□□□□ 0.89
CIITAP33076 AC004263.2-201ENST00000617183 678 ntBASIC20.64■□□□□ 0.89
CIITAP33076 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.64■□□□□ 0.89
CIITAP33076 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CIITAP33076 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CIITAP33076 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CIITAP33076 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.63■□□□□ 0.89
CIITAP33076 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.63■□□□□ 0.89
CIITAP33076 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.63■□□□□ 0.89
CIITAP33076 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms