Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.86■□□□□ 0.61
COL9A1P20849 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
COL9A1P20849 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
COL9A1P20849 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL9A1P20849 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL9A1P20849 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
COL9A1P20849 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.85■□□□□ 0.61
COL9A1P20849 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.85■□□□□ 0.61
COL9A1P20849 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.85■□□□□ 0.61
COL9A1P20849 PARP8-206ENST00000503665 572 ntTSL 4 BASIC18.85■□□□□ 0.61
COL9A1P20849 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.85■□□□□ 0.61
COL9A1P20849 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.85■□□□□ 0.61
COL9A1P20849 AC087641.1-201ENST00000557561 1021 ntBASIC18.85■□□□□ 0.61
COL9A1P20849 BNIP3P18-201ENST00000593976 575 ntBASIC18.85■□□□□ 0.61
COL9A1P20849 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.85■□□□□ 0.61
COL9A1P20849 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.85■□□□□ 0.61
COL9A1P20849 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.85■□□□□ 0.61
COL9A1P20849 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.85■□□□□ 0.61
COL9A1P20849 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.85■□□□□ 0.61
COL9A1P20849 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL9A1P20849 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.85■□□□□ 0.61
COL9A1P20849 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.84■□□□□ 0.61
COL9A1P20849 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.84■□□□□ 0.61
COL9A1P20849 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.84■□□□□ 0.61
COL9A1P20849 RN7SL606P-201ENST00000472779 293 ntBASIC18.84■□□□□ 0.61
COL9A1P20849 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 UNC93B6-202ENST00000528242 690 ntBASIC18.84■□□□□ 0.61
COL9A1P20849 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.84■□□□□ 0.61
COL9A1P20849 AC012640.2-201ENST00000561606 901 ntBASIC18.84■□□□□ 0.61
COL9A1P20849 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.84■□□□□ 0.61
COL9A1P20849 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL9A1P20849 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.84■□□□□ 0.61
COL9A1P20849 AC010240.3-201ENST00000607688 395 ntBASIC18.84■□□□□ 0.61
COL9A1P20849 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL9A1P20849 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.84■□□□□ 0.61
COL9A1P20849 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.84■□□□□ 0.61
COL9A1P20849 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.84■□□□□ 0.61
COL9A1P20849 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.84■□□□□ 0.61
COL9A1P20849 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL9A1P20849 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
COL9A1P20849 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL9A1P20849 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL9A1P20849 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL9A1P20849 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.83■□□□□ 0.61
COL9A1P20849 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL9A1P20849 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL9A1P20849 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL9A1P20849 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
COL9A1P20849 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL9A1P20849 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.83■□□□□ 0.61
COL9A1P20849 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.83■□□□□ 0.61
COL9A1P20849 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL9A1P20849 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.83■□□□□ 0.61
COL9A1P20849 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.83■□□□□ 0.61
COL9A1P20849 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.83■□□□□ 0.61
COL9A1P20849 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL9A1P20849 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.83■□□□□ 0.6
COL9A1P20849 TSEN15P1-201ENST00000423257 515 ntBASIC18.83■□□□□ 0.6
COL9A1P20849 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.83■□□□□ 0.6
COL9A1P20849 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.83■□□□□ 0.6
COL9A1P20849 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.83■□□□□ 0.6
COL9A1P20849 AC104390.1-201ENST00000555663 520 ntBASIC18.83■□□□□ 0.6
COL9A1P20849 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms