Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 FAM220CP-201ENST00000395253 831 ntBASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 CAND2-206ENST00000626378 333 ntTSL 5 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CSB-PGBD3P0DP91 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 AC009102.3-201ENST00000623118 1491 ntBASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 UROS-202ENST00000368778 1556 ntTSL 2 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CSB-PGBD3P0DP91 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 AC009533.2-201ENST00000543664 586 ntBASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 NARF-204ENST00000390006 1766 ntTSL 2 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 POLI-202ENST00000406285 2030 ntTSL 2 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CSB-PGBD3P0DP91 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 ASL-204ENST00000395331 1538 ntTSL 5 BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 AC104109.2-201ENST00000602919 1418 ntBASIC24.27■■□□□ 1.48
CSB-PGBD3P0DP91 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CSB-PGBD3P0DP91 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
CSB-PGBD3P0DP91 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
CSB-PGBD3P0DP91 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
CSB-PGBD3P0DP91 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
CSB-PGBD3P0DP91 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CSB-PGBD3P0DP91 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CSB-PGBD3P0DP91 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms