Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HOXD4P09016 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HOXD4P09016 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
HOXD4P09016 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.67■□□□□ 0.26
HOXD4P09016 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXD4P09016 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HOXD4P09016 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 KRT18P23-201ENST00000435622 1283 ntBASIC16.66■□□□□ 0.26
HOXD4P09016 BX276092.5-203ENST00000456199 560 ntBASIC16.66■□□□□ 0.26
HOXD4P09016 AC092597.1-201ENST00000487352 616 ntBASIC16.66■□□□□ 0.26
HOXD4P09016 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.66■□□□□ 0.26
HOXD4P09016 AC009065.1-201ENST00000564055 1225 ntBASIC16.66■□□□□ 0.26
HOXD4P09016 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXD4P09016 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.66■□□□□ 0.26
HOXD4P09016 AC011498.5-201ENST00000592027 486 ntBASIC16.66■□□□□ 0.26
HOXD4P09016 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXD4P09016 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXD4P09016 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXD4P09016 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXD4P09016 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.66■□□□□ 0.26
HOXD4P09016 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXD4P09016 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXD4P09016 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.66■□□□□ 0.26
HOXD4P09016 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXD4P09016 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXD4P09016 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXD4P09016 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 SPDYE13P-201ENST00000445314 798 ntBASIC16.65■□□□□ 0.26
HOXD4P09016 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXD4P09016 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HOXD4P09016 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 AL138781.2-201ENST00000617896 1843 ntBASIC16.65■□□□□ 0.26
HOXD4P09016 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
HOXD4P09016 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXD4P09016 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXD4P09016 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
HOXD4P09016 TNRC18P3-201ENST00000441896 2691 ntBASIC16.64■□□□□ 0.26
HOXD4P09016 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
HOXD4P09016 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HOXD4P09016 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXD4P09016 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXD4P09016 FP475955.4-201ENST00000623131 1990 ntBASIC16.64■□□□□ 0.25
HOXD4P09016 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXD4P09016 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXD4P09016 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXD4P09016 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXD4P09016 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXD4P09016 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXD4P09016 MIR662-201ENST00000384847 95 ntBASIC16.64■□□□□ 0.25
HOXD4P09016 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXD4P09016 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXD4P09016 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
HOXD4P09016 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXD4P09016 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.64■□□□□ 0.25
HOXD4P09016 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms