Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ESRRAP1-201ENST00000400596 1257 ntBASIC18.13■□□□□ 0.49
TRIM13O60858 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.13■□□□□ 0.49
TRIM13O60858 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.13■□□□□ 0.49
TRIM13O60858 CR392000.1-201ENST00000624770 1228 ntBASIC18.13■□□□□ 0.49
TRIM13O60858 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TRIM13O60858 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
TRIM13O60858 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM13O60858 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM13O60858 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM13O60858 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 HLA-L-209ENST00000420110 1011 ntBASIC18.12■□□□□ 0.49
TRIM13O60858 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
TRIM13O60858 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 AC008622.2-201ENST00000617006 1229 ntBASIC18.12■□□□□ 0.49
TRIM13O60858 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM13O60858 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM13O60858 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM13O60858 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM13O60858 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM13O60858 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TRIM13O60858 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM13O60858 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TRIM13O60858 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM13O60858 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 AC011506.1-201ENST00000474329 610 ntBASIC18.11■□□□□ 0.49
TRIM13O60858 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.11■□□□□ 0.49
TRIM13O60858 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.11■□□□□ 0.49
TRIM13O60858 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM13O60858 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM13O60858 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM13O60858 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TRIM13O60858 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM13O60858 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
TRIM13O60858 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM13O60858 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
TRIM13O60858 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRIM13O60858 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM13O60858 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM13O60858 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM13O60858 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRIM13O60858 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
TRIM13O60858 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRIM13O60858 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM13O60858 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM13O60858 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms