Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
CACNA1FO60840 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC23.05■■□□□ 1.28
CACNA1FO60840 AC009154.2-201ENST00000621177 724 ntBASIC23.05■■□□□ 1.28
CACNA1FO60840 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC23.05■■□□□ 1.28
CACNA1FO60840 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.05■■□□□ 1.28
CACNA1FO60840 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC23.05■■□□□ 1.28
CACNA1FO60840 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 TOLLIP-AS1-201ENST00000530897 939 ntBASIC23.05■■□□□ 1.28
CACNA1FO60840 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CACNA1FO60840 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC23.05■■□□□ 1.28
CACNA1FO60840 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.05■■□□□ 1.28
CACNA1FO60840 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
CACNA1FO60840 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC23.05■■□□□ 1.28
CACNA1FO60840 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC23.04■■□□□ 1.28
CACNA1FO60840 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC23.04■■□□□ 1.28
CACNA1FO60840 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC23.04■■□□□ 1.28
CACNA1FO60840 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC23.04■■□□□ 1.28
CACNA1FO60840 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.04■■□□□ 1.28
CACNA1FO60840 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.04■■□□□ 1.28
CACNA1FO60840 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC23.04■■□□□ 1.28
CACNA1FO60840 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CACNA1FO60840 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC23.04■■□□□ 1.28
CACNA1FO60840 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC23.04■■□□□ 1.28
CACNA1FO60840 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
CACNA1FO60840 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CACNA1FO60840 AC104819.1-201ENST00000504587 486 ntBASIC23.03■■□□□ 1.28
CACNA1FO60840 AC112698.1-201ENST00000510299 916 ntBASIC23.03■■□□□ 1.28
CACNA1FO60840 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.03■■□□□ 1.28
CACNA1FO60840 AP005901.3-202ENST00000581653 237 ntBASIC23.03■■□□□ 1.28
CACNA1FO60840 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC23.03■■□□□ 1.28
CACNA1FO60840 AP002414.4-201ENST00000589764 1148 ntBASIC23.03■■□□□ 1.28
CACNA1FO60840 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
CACNA1FO60840 AC011498.5-201ENST00000592027 486 ntBASIC23.03■■□□□ 1.28
CACNA1FO60840 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC23.03■■□□□ 1.28
CACNA1FO60840 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC23.03■■□□□ 1.28
CACNA1FO60840 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CACNA1FO60840 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CACNA1FO60840 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.03■■□□□ 1.28
CACNA1FO60840 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC23.03■■□□□ 1.28
CACNA1FO60840 AC135776.1-201ENST00000319817 2481 ntBASIC23.03■■□□□ 1.28
CACNA1FO60840 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
CACNA1FO60840 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CACNA1FO60840 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC23.02■■□□□ 1.28
CACNA1FO60840 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC23.02■■□□□ 1.28
CACNA1FO60840 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
CACNA1FO60840 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC23.02■■□□□ 1.28
CACNA1FO60840 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
CACNA1FO60840 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC23.02■■□□□ 1.28
CACNA1FO60840 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC23.02■■□□□ 1.28
CACNA1FO60840 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CACNA1FO60840 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.02■■□□□ 1.28
CACNA1FO60840 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.27
CACNA1FO60840 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC23.02■■□□□ 1.27
CACNA1FO60840 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1FO60840 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1FO60840 Z69720.1-201ENST00000601483 472 ntBASIC23.01■■□□□ 1.27
CACNA1FO60840 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1FO60840 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1FO60840 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC23.01■■□□□ 1.27
CACNA1FO60840 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1FO60840 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC23.01■■□□□ 1.27
CACNA1FO60840 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms