Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.92■□□□□ 0.46
HDAC3O15379 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
HDAC3O15379 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.92■□□□□ 0.46
HDAC3O15379 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.92■□□□□ 0.46
HDAC3O15379 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 AL353708.3-201ENST00000610272 989 ntBASIC17.92■□□□□ 0.46
HDAC3O15379 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 AL645608.8-201ENST00000606034 2086 ntBASIC17.92■□□□□ 0.46
HDAC3O15379 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.92■□□□□ 0.46
HDAC3O15379 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HDAC3O15379 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC3O15379 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HDAC3O15379 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
HDAC3O15379 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
HDAC3O15379 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.91■□□□□ 0.46
HDAC3O15379 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HDAC3O15379 MIR564-202ENST00000385049 94 ntBASIC17.91■□□□□ 0.46
HDAC3O15379 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 KSR1P1-201ENST00000446298 240 ntBASIC17.91■□□□□ 0.46
HDAC3O15379 AC026366.1-201ENST00000488803 879 ntBASIC17.91■□□□□ 0.46
HDAC3O15379 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.91■□□□□ 0.46
HDAC3O15379 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.91■□□□□ 0.46
HDAC3O15379 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 AC104771.1-201ENST00000603335 964 ntBASIC17.91■□□□□ 0.46
HDAC3O15379 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.91■□□□□ 0.46
HDAC3O15379 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 AC012313.1-201ENST00000593393 3059 ntBASIC17.91■□□□□ 0.46
HDAC3O15379 OR6D1P-202ENST00000641007 5290 ntBASIC17.91■□□□□ 0.46
HDAC3O15379 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC3O15379 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.91■□□□□ 0.46
HDAC3O15379 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.91■□□□□ 0.46
HDAC3O15379 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.9■□□□□ 0.46
HDAC3O15379 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.9■□□□□ 0.46
HDAC3O15379 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.9■□□□□ 0.46
HDAC3O15379 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.9■□□□□ 0.46
HDAC3O15379 AC133681.1-201ENST00000465482 601 ntBASIC17.9■□□□□ 0.46
HDAC3O15379 RPS2P4-201ENST00000476944 856 ntBASIC17.9■□□□□ 0.46
HDAC3O15379 AP002982.1-201ENST00000492365 877 ntBASIC17.9■□□□□ 0.46
HDAC3O15379 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.9■□□□□ 0.46
HDAC3O15379 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HDAC3O15379 AC124016.1-201ENST00000609552 612 ntBASIC17.9■□□□□ 0.46
HDAC3O15379 AC011298.2-201ENST00000617989 482 ntBASIC17.9■□□□□ 0.46
HDAC3O15379 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
HDAC3O15379 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.9■□□□□ 0.46
HDAC3O15379 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC3O15379 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC3O15379 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HDAC3O15379 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
HDAC3O15379 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HDAC3O15379 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HDAC3O15379 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.89■□□□□ 0.45
HDAC3O15379 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.89■□□□□ 0.45
HDAC3O15379 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
HDAC3O15379 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HDAC3O15379 AC110285.5-201ENST00000611501 352 ntBASIC17.89■□□□□ 0.45
HDAC3O15379 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC3O15379 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HDAC3O15379 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms