Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HMGB3O15347 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 SPI1-203ENST00000533030 661 ntTSL 2 BASIC14.81□□□□□ -0.04
HMGB3O15347 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC14.81□□□□□ -0.04
HMGB3O15347 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
HMGB3O15347 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.81□□□□□ -0.04
HMGB3O15347 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HMGB3O15347 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.81□□□□□ -0.04
HMGB3O15347 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HMGB3O15347 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HMGB3O15347 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HMGB3O15347 AL162741.1-201ENST00000565563 1558 ntBASIC14.81□□□□□ -0.04
HMGB3O15347 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
HMGB3O15347 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 AC080080.1-201ENST00000625121 2420 ntBASIC14.81□□□□□ -0.04
HMGB3O15347 AC135776.1-201ENST00000319817 2481 ntBASIC14.81□□□□□ -0.04
HMGB3O15347 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.8□□□□□ -0.04
HMGB3O15347 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 HES2-205ENST00000487437 968 ntTSL 3 BASIC14.8□□□□□ -0.04
HMGB3O15347 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.8□□□□□ -0.04
HMGB3O15347 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC14.8□□□□□ -0.04
HMGB3O15347 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 GNAS-203ENST00000306120 1878 ntBASIC14.8□□□□□ -0.04
HMGB3O15347 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HMGB3O15347 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.8□□□□□ -0.04
HMGB3O15347 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.8□□□□□ -0.04
HMGB3O15347 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.8□□□□□ -0.04
HMGB3O15347 AC067930.6-201ENST00000623257 4947 ntBASIC14.8□□□□□ -0.04
HMGB3O15347 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
HMGB3O15347 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.8□□□□□ -0.04
HMGB3O15347 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HMGB3O15347 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
HMGB3O15347 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HMGB3O15347 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 KRT17P1-201ENST00000399211 1546 ntBASIC14.79□□□□□ -0.04
HMGB3O15347 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 SERP1-205ENST00000487153 657 ntTSL 4 BASIC14.79□□□□□ -0.04
HMGB3O15347 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.79□□□□□ -0.04
HMGB3O15347 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms