Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 AC007967.2-201ENST00000432613 625 ntBASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 SNHG9-202ENST00000564014 471 ntBASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 AC011467.4-201ENST00000594891 528 ntBASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 COPE-211ENST00000600932 1144 ntTSL 5 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 AL596442.2-201ENST00000610240 980 ntBASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
ZC3H4Q9UPT8 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 RPS29-206ENST00000557111 488 ntTSL 2 BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 AL138831.2-201ENST00000606564 490 ntBASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
ZC3H4Q9UPT8 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC22.2■■□□□ 1.15
ZC3H4Q9UPT8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
ZC3H4Q9UPT8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 AC005829.1-201ENST00000570002 483 ntBASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC22.2■■□□□ 1.14
ZC3H4Q9UPT8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 AC023274.1-201ENST00000418278 595 ntBASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 AC009947.1-201ENST00000444350 727 ntBASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
ZC3H4Q9UPT8 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 LAGE3P1-201ENST00000425356 484 ntBASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms