Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
COL20A1Q9P218 AC026396.1-201ENST00000419388 421 ntBASIC20.77■□□□□ 0.92
COL20A1Q9P218 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.77■□□□□ 0.92
COL20A1Q9P218 AC104819.1-201ENST00000504587 486 ntBASIC20.77■□□□□ 0.92
COL20A1Q9P218 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.77■□□□□ 0.92
COL20A1Q9P218 AL353801.3-201ENST00000609898 542 ntBASIC20.77■□□□□ 0.92
COL20A1Q9P218 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL20A1Q9P218 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
COL20A1Q9P218 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL20A1Q9P218 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL20A1Q9P218 AC126763.1-201ENST00000552015 2118 ntBASIC20.77■□□□□ 0.91
COL20A1Q9P218 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
COL20A1Q9P218 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
COL20A1Q9P218 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.76■□□□□ 0.91
COL20A1Q9P218 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 TPM4P1-201ENST00000436100 807 ntBASIC20.76■□□□□ 0.91
COL20A1Q9P218 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.76■□□□□ 0.91
COL20A1Q9P218 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 AC138894.3-201ENST00000603787 634 ntBASIC20.76■□□□□ 0.91
COL20A1Q9P218 AL691432.3-201ENST00000621860 400 ntBASIC20.76■□□□□ 0.91
COL20A1Q9P218 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL20A1Q9P218 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.76■□□□□ 0.91
COL20A1Q9P218 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL20A1Q9P218 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.75■□□□□ 0.91
COL20A1Q9P218 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.75■□□□□ 0.91
COL20A1Q9P218 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL20A1Q9P218 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.75■□□□□ 0.91
COL20A1Q9P218 AC099336.1-202ENST00000602961 463 ntBASIC20.75■□□□□ 0.91
COL20A1Q9P218 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 AP000974.1-201ENST00000623909 2387 ntBASIC20.75■□□□□ 0.91
COL20A1Q9P218 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL20A1Q9P218 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.75■□□□□ 0.91
COL20A1Q9P218 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL20A1Q9P218 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 NSUN5P1-202ENST00000421140 1535 ntBASIC20.74■□□□□ 0.91
COL20A1Q9P218 NSUN5P2-203ENST00000457352 1529 ntBASIC20.74■□□□□ 0.91
COL20A1Q9P218 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 AC246785.2-201ENST00000432512 513 ntBASIC20.74■□□□□ 0.91
COL20A1Q9P218 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 KRT18P31-201ENST00000506277 1292 ntBASIC20.74■□□□□ 0.91
COL20A1Q9P218 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 AC111152.3-201ENST00000569699 673 ntBASIC20.74■□□□□ 0.91
COL20A1Q9P218 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 Z69720.1-201ENST00000601483 472 ntBASIC20.74■□□□□ 0.91
COL20A1Q9P218 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.74■□□□□ 0.91
COL20A1Q9P218 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL20A1Q9P218 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.74■□□□□ 0.91
COL20A1Q9P218 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL20A1Q9P218 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
COL20A1Q9P218 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL20A1Q9P218 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL20A1Q9P218 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.73■□□□□ 0.91
COL20A1Q9P218 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL20A1Q9P218 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL20A1Q9P218 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL20A1Q9P218 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms