Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SDHAP1-207ENST00000440850 2000 ntBASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 AC099791.1-201ENST00000416440 715 ntBASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 OR2A1-AS1-204ENST00000470435 602 ntBASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCX3AQ9NNX9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 AC138028.4-201ENST00000564984 1845 ntBASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 AC027682.1-201ENST00000562846 899 ntBASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCX3AQ9NNX9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VCX3AQ9NNX9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VCX3AQ9NNX9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 AC104187.1-201ENST00000607510 612 ntBASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 AL354811.1-201ENST00000610286 706 ntBASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 LINC00554-201ENST00000564841 3011 ntBASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms