Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 AL445675.2-201ENST00000620291 557 ntBASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 AL391005.1-201ENST00000623953 2435 ntBASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28BQ9BUN5 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 AC131212.4-201ENST00000623606 975 ntBASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC28BQ9BUN5 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 AP000593.1-201ENST00000393668 712 ntBASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms