Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC42Q96M95 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC42Q96M95 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 KRT18P6-201ENST00000555540 1265 ntBASIC19.88■□□□□ 0.77
CCDC42Q96M95 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 AC073648.6-201ENST00000641589 218 ntBASIC19.88■□□□□ 0.77
CCDC42Q96M95 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC42Q96M95 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC42Q96M95 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CCDC42Q96M95 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC42Q96M95 FLJ13224-201ENST00000313737 1514 ntBASIC19.86■□□□□ 0.77
CCDC42Q96M95 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC42Q96M95 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC42Q96M95 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC42Q96M95 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC42Q96M95 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC42Q96M95 AP000593.1-201ENST00000393668 712 ntBASIC19.86■□□□□ 0.77
CCDC42Q96M95 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms