Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 FSCN1P1-201ENST00000568912 1481 ntBASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 AL357033.4-201ENST00000617703 1807 ntBASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 GCSHP5-201ENST00000443090 522 ntBASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 AP000692.2-201ENST00000608391 879 ntBASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 AL135905.2-201ENST00000584934 1404 ntBASIC17.27■□□□□ 0.35
CLIP4Q8N3C7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP4Q8N3C7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP4Q8N3C7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.27■□□□□ 0.35
CLIP4Q8N3C7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.35
CLIP4Q8N3C7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.27■□□□□ 0.35
CLIP4Q8N3C7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
CLIP4Q8N3C7 AC009053.2-201ENST00000563701 2365 ntBASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 PRORSD1P-202ENST00000563365 2154 ntBASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 AC073592.3-201ENST00000625118 1834 ntBASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.26■□□□□ 0.35
CLIP4Q8N3C7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 RCC2P3-201ENST00000418112 1537 ntBASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CLIP4Q8N3C7 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms