Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 HOXB1-202ENST00000577092 1414 ntBASIC17.37■□□□□ 0.37
CCDC116Q8IYX3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC116Q8IYX3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC116Q8IYX3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC116Q8IYX3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC116Q8IYX3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC116Q8IYX3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC116Q8IYX3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 AL390961.4-201ENST00000623958 2535 ntBASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 AL163051.1-201ENST00000569214 1512 ntBASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC116Q8IYX3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AL512604.3-201ENST00000569583 964 ntBASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC145285.6-201ENST00000604632 637 ntBASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC112497.1-201ENST00000624824 639 ntBASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC133561.5-201ENST00000635547 218 ntBASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 AC135776.1-201ENST00000319817 2481 ntBASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC116Q8IYX3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 AC009947.2-201ENST00000444014 672 ntBASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 AC073912.3-201ENST00000624414 853 ntBASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms