Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 AP000593.1-201ENST00000393668 712 ntBASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 LIN28AP1-201ENST00000429574 405 ntBASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 TUBB8P6-201ENST00000436895 1288 ntBASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 AL121829.2-201ENST00000620908 328 ntBASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 AL691432.3-201ENST00000621860 400 ntBASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 FAM197Y1-201ENST00000421178 764 ntBASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 ATP5G1P1-201ENST00000448724 379 ntBASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 AC006011.2-201ENST00000621313 1158 ntBASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 AC005332.8-201ENST00000622750 2735 ntBASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 ANO7L1-203ENST00000602586 1720 ntBASIC15.29■□□□□ 0.04
PDLIM3Q53GG5 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 AL353807.1-201ENST00000427475 662 ntBASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 TSPY21P-201ENST00000433481 731 ntBASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 AC006538.3-201ENST00000612495 578 ntBASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms