Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 AC004264.1-201ENST00000608354 794 ntBASIC16.49■□□□□ 0.23
CCDC58Q4VC31 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC58Q4VC31 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 GUSBP6-202ENST00000438529 1198 ntBASIC16.48■□□□□ 0.23
CCDC58Q4VC31 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 TSPY6P-201ENST00000448518 926 ntBASIC16.48■□□□□ 0.23
CCDC58Q4VC31 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC58Q4VC31 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 KRT8P3-201ENST00000519669 1449 ntBASIC16.47■□□□□ 0.23
CCDC58Q4VC31 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 POU5F1P3-201ENST00000428824 1078 ntBASIC16.47■□□□□ 0.23
CCDC58Q4VC31 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 NBPF21P-201ENST00000425093 1451 ntBASIC16.47■□□□□ 0.23
CCDC58Q4VC31 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC58Q4VC31 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 AC093677.2-201ENST00000600169 1863 ntBASIC16.46■□□□□ 0.23
CCDC58Q4VC31 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 AL137784.2-201ENST00000607332 1000 ntBASIC16.46■□□□□ 0.23
CCDC58Q4VC31 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC58Q4VC31 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms