Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 OR6D1P-202ENST00000641007 5290 ntBASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 AP000593.1-201ENST00000393668 712 ntBASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 MIR1238-201ENST00000408483 83 ntBASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC40Q4G0X9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 SLC25A1P2-201ENST00000430693 912 ntBASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 AP003041.3-201ENST00000527151 707 ntBASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 FITM1-202ENST00000559294 800 ntBASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CCDC40Q4G0X9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC40Q4G0X9 AC135776.1-201ENST00000319817 2481 ntBASIC20.27■□□□□ 0.83
CCDC40Q4G0X9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC40Q4G0X9 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC40Q4G0X9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
CCDC40Q4G0X9 KRT17P2-201ENST00000300992 1314 ntBASIC20.27■□□□□ 0.83
CCDC40Q4G0X9 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 TSPY17P-201ENST00000450329 467 ntBASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 AL355075.4-201ENST00000554988 638 ntBASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC40Q4G0X9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms