Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SUMO3P55854 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SUMO3P55854 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SUMO3P55854 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.67■□□□□ 0.26
SUMO3P55854 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.67■□□□□ 0.26
SUMO3P55854 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SUMO3P55854 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SUMO3P55854 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SUMO3P55854 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SUMO3P55854 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SUMO3P55854 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.66■□□□□ 0.26
SUMO3P55854 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SUMO3P55854 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SUMO3P55854 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.66■□□□□ 0.26
SUMO3P55854 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.66■□□□□ 0.26
SUMO3P55854 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.66■□□□□ 0.26
SUMO3P55854 FAM8A6P-201ENST00000407496 1135 ntBASIC16.66■□□□□ 0.26
SUMO3P55854 SPDYE15P-201ENST00000424157 909 ntBASIC16.66■□□□□ 0.26
SUMO3P55854 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.66■□□□□ 0.26
SUMO3P55854 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.66■□□□□ 0.26
SUMO3P55854 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.66■□□□□ 0.26
SUMO3P55854 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SUMO3P55854 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.65■□□□□ 0.26
SUMO3P55854 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SUMO3P55854 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.65■□□□□ 0.26
SUMO3P55854 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.65■□□□□ 0.26
SUMO3P55854 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.65■□□□□ 0.26
SUMO3P55854 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.65■□□□□ 0.26
SUMO3P55854 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.65■□□□□ 0.26
SUMO3P55854 FAM210CP-201ENST00000445714 574 ntBASIC16.65■□□□□ 0.26
SUMO3P55854 AC104076.2-201ENST00000448912 469 ntBASIC16.65■□□□□ 0.26
SUMO3P55854 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.65■□□□□ 0.26
SUMO3P55854 DUX4L26-201ENST00000489078 1255 ntBASIC16.65■□□□□ 0.26
SUMO3P55854 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.65■□□□□ 0.26
SUMO3P55854 AC022616.7-201ENST00000525383 220 ntBASIC16.65■□□□□ 0.26
SUMO3P55854 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.65■□□□□ 0.26
SUMO3P55854 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.65■□□□□ 0.26
SUMO3P55854 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 AL136038.4-201ENST00000603606 1261 ntBASIC16.65■□□□□ 0.26
SUMO3P55854 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
SUMO3P55854 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
SUMO3P55854 AL024508.2-201ENST00000607749 1894 ntBASIC16.65■□□□□ 0.26
SUMO3P55854 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SUMO3P55854 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SUMO3P55854 HCG11-201ENST00000411553 5696 ntBASIC16.65■□□□□ 0.26
SUMO3P55854 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
SUMO3P55854 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SUMO3P55854 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
SUMO3P55854 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SUMO3P55854 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 ESPNP-201ENST00000270691 2015 ntBASIC16.64■□□□□ 0.25
SUMO3P55854 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SUMO3P55854 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SUMO3P55854 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms