Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC21.23■□□□□ 0.99
HMGCS2P54868 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.23■□□□□ 0.99
HMGCS2P54868 AC005336.2-201ENST00000593183 939 ntBASIC21.23■□□□□ 0.99
HMGCS2P54868 AC008608.2-201ENST00000606089 416 ntBASIC21.23■□□□□ 0.99
HMGCS2P54868 AC083906.6-201ENST00000641366 219 ntBASIC21.23■□□□□ 0.99
HMGCS2P54868 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.23■□□□□ 0.99
HMGCS2P54868 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGCS2P54868 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGCS2P54868 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.22■□□□□ 0.99
HMGCS2P54868 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGCS2P54868 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGCS2P54868 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGCS2P54868 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGCS2P54868 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGCS2P54868 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGCS2P54868 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
HMGCS2P54868 TLE1-202ENST00000376484 666 ntTSL 3 BASIC21.22■□□□□ 0.99
HMGCS2P54868 RCN1P2-201ENST00000398357 915 ntBASIC21.22■□□□□ 0.99
HMGCS2P54868 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
HMGCS2P54868 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGCS2P54868 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGCS2P54868 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.22■□□□□ 0.99
HMGCS2P54868 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGCS2P54868 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
HMGCS2P54868 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGCS2P54868 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGCS2P54868 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGCS2P54868 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGCS2P54868 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGCS2P54868 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGCS2P54868 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HMGCS2P54868 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 MIR574-201ENST00000385209 96 ntBASIC21.21■□□□□ 0.99
HMGCS2P54868 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
HMGCS2P54868 AF186996.4-201ENST00000467186 377 ntBASIC21.21■□□□□ 0.99
HMGCS2P54868 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.21■□□□□ 0.99
HMGCS2P54868 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.21■□□□□ 0.99
HMGCS2P54868 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HMGCS2P54868 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGCS2P54868 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
HMGCS2P54868 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 SDHAP2-201ENST00000455183 2001 ntBASIC21.21■□□□□ 0.99
HMGCS2P54868 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
HMGCS2P54868 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGCS2P54868 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.2■□□□□ 0.99
HMGCS2P54868 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
HMGCS2P54868 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
HMGCS2P54868 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.99
HMGCS2P54868 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGCS2P54868 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.2■□□□□ 0.98
HMGCS2P54868 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.2■□□□□ 0.98
HMGCS2P54868 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.2■□□□□ 0.98
HMGCS2P54868 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGCS2P54868 PMS2P1-201ENST00000431037 1228 ntBASIC21.2■□□□□ 0.98
HMGCS2P54868 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC21.2■□□□□ 0.98
HMGCS2P54868 AC068472.1-201ENST00000474589 881 ntBASIC21.2■□□□□ 0.98
HMGCS2P54868 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.2■□□□□ 0.98
HMGCS2P54868 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.2■□□□□ 0.98
HMGCS2P54868 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGCS2P54868 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21.2■□□□□ 0.98
HMGCS2P54868 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGCS2P54868 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 TP73-AS1-210ENST00000637775 1455 ntBASIC21.2■□□□□ 0.98
HMGCS2P54868 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.2■□□□□ 0.98
HMGCS2P54868 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGCS2P54868 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGCS2P54868 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGCS2P54868 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGCS2P54868 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HMGCS2P54868 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
HMGCS2P54868 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGCS2P54868 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGCS2P54868 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGCS2P54868 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGCS2P54868 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.19■□□□□ 0.98
HMGCS2P54868 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.19■□□□□ 0.98
HMGCS2P54868 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGCS2P54868 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HMGCS2P54868 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
HMGCS2P54868 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGCS2P54868 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC21.19■□□□□ 0.98
HMGCS2P54868 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms