Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFC3P40938 TNXA-203ENST00000507684 2038 ntBASIC16.85■□□□□ 0.29
RFC3P40938 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.85■□□□□ 0.29
RFC3P40938 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFC3P40938 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFC3P40938 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
RFC3P40938 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.85■□□□□ 0.29
RFC3P40938 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFC3P40938 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RFC3P40938 LTB4R2-202ENST00000528054 3092 ntBASIC16.84■□□□□ 0.29
RFC3P40938 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.84■□□□□ 0.29
RFC3P40938 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
RFC3P40938 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RFC3P40938 BX276092.5-203ENST00000456199 560 ntBASIC16.84■□□□□ 0.29
RFC3P40938 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 RNF126P1-202ENST00000569893 925 ntBASIC16.84■□□□□ 0.29
RFC3P40938 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
RFC3P40938 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.84■□□□□ 0.29
RFC3P40938 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RFC3P40938 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.84■□□□□ 0.29
RFC3P40938 AC004408.2-201ENST00000623613 2777 ntBASIC16.84■□□□□ 0.29
RFC3P40938 KRT8P7-201ENST00000533003 1432 ntBASIC16.84■□□□□ 0.29
RFC3P40938 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.84■□□□□ 0.29
RFC3P40938 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.84■□□□□ 0.29
RFC3P40938 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.84■□□□□ 0.29
RFC3P40938 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
RFC3P40938 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
RFC3P40938 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RFC3P40938 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFC3P40938 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RFC3P40938 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.83■□□□□ 0.28
RFC3P40938 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.83■□□□□ 0.28
RFC3P40938 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.83■□□□□ 0.28
RFC3P40938 MTMR9LP-203ENST00000426597 1545 ntBASIC16.83■□□□□ 0.28
RFC3P40938 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.83■□□□□ 0.28
RFC3P40938 TSSC2-201ENST00000450217 709 ntBASIC16.83■□□□□ 0.28
RFC3P40938 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.83■□□□□ 0.28
RFC3P40938 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.83■□□□□ 0.28
RFC3P40938 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
RFC3P40938 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.83■□□□□ 0.28
RFC3P40938 KRT126P-201ENST00000549467 1181 ntBASIC16.83■□□□□ 0.28
RFC3P40938 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
RFC3P40938 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.83■□□□□ 0.28
RFC3P40938 NPAP1P7-201ENST00000613027 823 ntBASIC16.83■□□□□ 0.28
RFC3P40938 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 AC016734.2-201ENST00000624325 1377 ntBASIC16.83■□□□□ 0.28
RFC3P40938 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.83■□□□□ 0.28
RFC3P40938 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.83■□□□□ 0.28
RFC3P40938 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFC3P40938 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.83■□□□□ 0.28
RFC3P40938 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.82■□□□□ 0.28
RFC3P40938 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 AC020763.4-201ENST00000623414 4170 ntBASIC16.82■□□□□ 0.28
RFC3P40938 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.82■□□□□ 0.28
RFC3P40938 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
RFC3P40938 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
RFC3P40938 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.82■□□□□ 0.28
RFC3P40938 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
RFC3P40938 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFC3P40938 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
RFC3P40938 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms