Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.09■□□□□ 0.97
SMARCA1P28370 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.09■□□□□ 0.97
SMARCA1P28370 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.09■□□□□ 0.97
SMARCA1P28370 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SMARCA1P28370 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
SMARCA1P28370 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.09■□□□□ 0.97
SMARCA1P28370 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.09■□□□□ 0.97
SMARCA1P28370 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SMARCA1P28370 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.08■□□□□ 0.97
SMARCA1P28370 AC090164.3-201ENST00000610780 2143 ntBASIC21.08■□□□□ 0.97
SMARCA1P28370 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCA1P28370 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCA1P28370 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCA1P28370 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.08■□□□□ 0.97
SMARCA1P28370 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.08■□□□□ 0.97
SMARCA1P28370 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCA1P28370 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SMARCA1P28370 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMARCA1P28370 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.08■□□□□ 0.97
SMARCA1P28370 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.08■□□□□ 0.97
SMARCA1P28370 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.08■□□□□ 0.97
SMARCA1P28370 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMARCA1P28370 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SMARCA1P28370 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SMARCA1P28370 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.08■□□□□ 0.96
SMARCA1P28370 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.07■□□□□ 0.96
SMARCA1P28370 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.07■□□□□ 0.96
SMARCA1P28370 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMARCA1P28370 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
SMARCA1P28370 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.07■□□□□ 0.96
SMARCA1P28370 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMARCA1P28370 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SMARCA1P28370 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.07■□□□□ 0.96
SMARCA1P28370 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.07■□□□□ 0.96
SMARCA1P28370 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.07■□□□□ 0.96
SMARCA1P28370 Z83836.1-201ENST00000624605 1642 ntBASIC21.07■□□□□ 0.96
SMARCA1P28370 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SMARCA1P28370 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMARCA1P28370 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.06■□□□□ 0.96
SMARCA1P28370 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.06■□□□□ 0.96
SMARCA1P28370 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.06■□□□□ 0.96
SMARCA1P28370 TSPY22P-201ENST00000427496 604 ntBASIC21.06■□□□□ 0.96
SMARCA1P28370 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.06■□□□□ 0.96
SMARCA1P28370 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.06■□□□□ 0.96
SMARCA1P28370 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.06■□□□□ 0.96
SMARCA1P28370 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.06■□□□□ 0.96
SMARCA1P28370 AL121672.3-201ENST00000608644 468 ntBASIC21.06■□□□□ 0.96
SMARCA1P28370 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.06■□□□□ 0.96
SMARCA1P28370 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.06■□□□□ 0.96
SMARCA1P28370 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 AL353692.3-201ENST00000407031 1396 ntBASIC21.06■□□□□ 0.96
SMARCA1P28370 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.06■□□□□ 0.96
SMARCA1P28370 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMARCA1P28370 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SMARCA1P28370 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SMARCA1P28370 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.05■□□□□ 0.96
SMARCA1P28370 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.05■□□□□ 0.96
SMARCA1P28370 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.05■□□□□ 0.96
SMARCA1P28370 AC004263.2-201ENST00000617183 678 ntBASIC21.05■□□□□ 0.96
SMARCA1P28370 AC016734.2-201ENST00000624325 1377 ntBASIC21.05■□□□□ 0.96
SMARCA1P28370 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SMARCA1P28370 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMARCA1P28370 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SMARCA1P28370 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms