Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 AK4P3-201ENST00000418260 669 ntBASIC18.34■□□□□ 0.53
MSH3P20585 AC117947.1-201ENST00000427448 529 ntBASIC18.34■□□□□ 0.53
MSH3P20585 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.34■□□□□ 0.53
MSH3P20585 YBX1P2-201ENST00000489612 999 ntBASIC18.34■□□□□ 0.53
MSH3P20585 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
MSH3P20585 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.34■□□□□ 0.53
MSH3P20585 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
MSH3P20585 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
MSH3P20585 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.34■□□□□ 0.53
MSH3P20585 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.34■□□□□ 0.53
MSH3P20585 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
MSH3P20585 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH3P20585 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH3P20585 KRT8P50-201ENST00000562022 1438 ntBASIC18.33■□□□□ 0.53
MSH3P20585 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH3P20585 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.33■□□□□ 0.52
MSH3P20585 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
MSH3P20585 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
MSH3P20585 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.33■□□□□ 0.52
MSH3P20585 AC104390.1-201ENST00000555663 520 ntBASIC18.33■□□□□ 0.52
MSH3P20585 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.33■□□□□ 0.52
MSH3P20585 AC006011.2-201ENST00000621313 1158 ntBASIC18.33■□□□□ 0.52
MSH3P20585 AC011558.1-201ENST00000623459 338 ntBASIC18.33■□□□□ 0.52
MSH3P20585 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.33■□□□□ 0.52
MSH3P20585 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.33■□□□□ 0.52
MSH3P20585 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH3P20585 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
MSH3P20585 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
MSH3P20585 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
MSH3P20585 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
MSH3P20585 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
MSH3P20585 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
MSH3P20585 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.32■□□□□ 0.52
MSH3P20585 AC104076.2-201ENST00000448912 469 ntBASIC18.32■□□□□ 0.52
MSH3P20585 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.32■□□□□ 0.52
MSH3P20585 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.32■□□□□ 0.52
MSH3P20585 GCSHP2-201ENST00000560971 527 ntBASIC18.32■□□□□ 0.52
MSH3P20585 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.32■□□□□ 0.52
MSH3P20585 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.32■□□□□ 0.52
MSH3P20585 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
MSH3P20585 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.32■□□□□ 0.52
MSH3P20585 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.32■□□□□ 0.52
MSH3P20585 MYLKP1-201ENST00000509077 1580 ntBASIC18.32■□□□□ 0.52
MSH3P20585 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 AC009113.1-201ENST00000570267 2443 ntBASIC18.32■□□□□ 0.52
MSH3P20585 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH3P20585 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.32■□□□□ 0.52
MSH3P20585 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
MSH3P20585 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
MSH3P20585 RNF152P1-201ENST00000397754 604 ntBASIC18.31■□□□□ 0.52
MSH3P20585 SEC1P-202ENST00000473944 940 ntBASIC18.31■□□□□ 0.52
MSH3P20585 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 AC009065.1-201ENST00000564055 1225 ntBASIC18.31■□□□□ 0.52
MSH3P20585 AL441883.1-201ENST00000566170 1045 ntBASIC18.31■□□□□ 0.52
MSH3P20585 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.31■□□□□ 0.52
MSH3P20585 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.31■□□□□ 0.52
MSH3P20585 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms