Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.12■□□□□ 0.65
COL6A3P12111 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
COL6A3P12111 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A3P12111 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A3P12111 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.12■□□□□ 0.65
COL6A3P12111 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
COL6A3P12111 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
COL6A3P12111 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A3P12111 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 AC105339.1-204ENST00000636249 355 ntBASIC19.12■□□□□ 0.65
COL6A3P12111 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
COL6A3P12111 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.11■□□□□ 0.65
COL6A3P12111 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL6A3P12111 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
COL6A3P12111 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A3P12111 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.11■□□□□ 0.65
COL6A3P12111 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL6A3P12111 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC19.11■□□□□ 0.65
COL6A3P12111 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.11■□□□□ 0.65
COL6A3P12111 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL6A3P12111 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A3P12111 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A3P12111 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.11■□□□□ 0.65
COL6A3P12111 AC112777.1-201ENST00000540175 1423 ntBASIC19.1■□□□□ 0.65
COL6A3P12111 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A3P12111 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC19.1■□□□□ 0.65
COL6A3P12111 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 AL512353.2-201ENST00000448759 1962 ntBASIC19.1■□□□□ 0.65
COL6A3P12111 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A3P12111 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A3P12111 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC19.1■□□□□ 0.65
COL6A3P12111 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.1■□□□□ 0.65
COL6A3P12111 KRT19P2-202ENST00000557173 1012 ntBASIC19.1■□□□□ 0.65
COL6A3P12111 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
COL6A3P12111 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A3P12111 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.09■□□□□ 0.65
COL6A3P12111 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.09■□□□□ 0.65
COL6A3P12111 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.09■□□□□ 0.65
COL6A3P12111 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.09■□□□□ 0.65
COL6A3P12111 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL6A3P12111 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.09■□□□□ 0.65
COL6A3P12111 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.09■□□□□ 0.65
COL6A3P12111 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.09■□□□□ 0.65
COL6A3P12111 VN2R19P-201ENST00000442399 1052 ntBASIC19.09■□□□□ 0.65
COL6A3P12111 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC19.09■□□□□ 0.65
COL6A3P12111 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.09■□□□□ 0.65
COL6A3P12111 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.09■□□□□ 0.65
COL6A3P12111 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
COL6A3P12111 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.09■□□□□ 0.65
COL6A3P12111 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL6A3P12111 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL6A3P12111 AC010336.2-201ENST00000564226 506 ntBASIC19.09■□□□□ 0.65
COL6A3P12111 COQ9-214ENST00000567933 882 ntTSL 3 BASIC19.09■□□□□ 0.65
COL6A3P12111 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.09■□□□□ 0.65
COL6A3P12111 AC006333.2-201ENST00000607957 2099 ntBASIC19.09■□□□□ 0.65
COL6A3P12111 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL6A3P12111 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A3P12111 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL6A3P12111 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL6A3P12111 MIR1909-201ENST00000411312 80 ntBASIC19.08■□□□□ 0.65
COL6A3P12111 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC19.08■□□□□ 0.65
COL6A3P12111 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.08■□□□□ 0.65
COL6A3P12111 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms