Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.33■■□□□ 1.01
CTDNEP1O95476 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.33■■□□□ 1.01
CTDNEP1O95476 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.33■■□□□ 1.01
CTDNEP1O95476 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.33■■□□□ 1.01
CTDNEP1O95476 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.33■■□□□ 1.01
CTDNEP1O95476 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTDNEP1O95476 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.33■■□□□ 1.01
CTDNEP1O95476 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.33■■□□□ 1.01
CTDNEP1O95476 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CTDNEP1O95476 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.33■■□□□ 1
CTDNEP1O95476 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CTDNEP1O95476 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CTDNEP1O95476 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.32■■□□□ 1
CTDNEP1O95476 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CTDNEP1O95476 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.32■■□□□ 1
CTDNEP1O95476 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CTDNEP1O95476 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.32■■□□□ 1
CTDNEP1O95476 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.32■■□□□ 1
CTDNEP1O95476 SLC25A3P1-201ENST00000443844 931 ntBASIC21.32■■□□□ 1
CTDNEP1O95476 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.32■■□□□ 1
CTDNEP1O95476 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 NEK4P2-201ENST00000580004 1012 ntBASIC21.32■■□□□ 1
CTDNEP1O95476 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.32■■□□□ 1
CTDNEP1O95476 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CTDNEP1O95476 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDNEP1O95476 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
CTDNEP1O95476 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.32■■□□□ 1
CTDNEP1O95476 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.31■■□□□ 1
CTDNEP1O95476 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.31■■□□□ 1
CTDNEP1O95476 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
CTDNEP1O95476 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.31■■□□□ 1
CTDNEP1O95476 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.31■■□□□ 1
CTDNEP1O95476 AC141257.4-201ENST00000634557 245 ntBASIC21.31■■□□□ 1
CTDNEP1O95476 AC136944.6-201ENST00000634818 245 ntBASIC21.31■■□□□ 1
CTDNEP1O95476 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CTDNEP1O95476 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.31■■□□□ 1
CTDNEP1O95476 AC097493.4-201ENST00000641197 219 ntBASIC21.31■■□□□ 1
CTDNEP1O95476 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.31■■□□□ 1
CTDNEP1O95476 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTDNEP1O95476 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CTDNEP1O95476 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CTDNEP1O95476 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTDNEP1O95476 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CTDNEP1O95476 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.3■■□□□ 1
CTDNEP1O95476 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CTDNEP1O95476 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTDNEP1O95476 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTDNEP1O95476 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTDNEP1O95476 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
CTDNEP1O95476 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CTDNEP1O95476 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.3■■□□□ 1
CTDNEP1O95476 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms