Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.64■□□□□ 0.41
SEMA3DO95025 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 KRT18P23-201ENST00000435622 1283 ntBASIC17.64■□□□□ 0.41
SEMA3DO95025 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.64■□□□□ 0.41
SEMA3DO95025 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SEMA3DO95025 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.64■□□□□ 0.41
SEMA3DO95025 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.64■□□□□ 0.41
SEMA3DO95025 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SEMA3DO95025 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SEMA3DO95025 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SEMA3DO95025 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.63■□□□□ 0.41
SEMA3DO95025 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
SEMA3DO95025 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.63■□□□□ 0.41
SEMA3DO95025 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.63■□□□□ 0.41
SEMA3DO95025 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SEMA3DO95025 MIR3180-4-201ENST00000582223 153 ntBASIC17.63■□□□□ 0.41
SEMA3DO95025 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 FAM87A-204ENST00000613235 858 ntBASIC17.63■□□□□ 0.41
SEMA3DO95025 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
SEMA3DO95025 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SEMA3DO95025 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SEMA3DO95025 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SEMA3DO95025 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 AL354751.1-201ENST00000412768 1863 ntBASIC17.63■□□□□ 0.41
SEMA3DO95025 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SEMA3DO95025 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 INGX-201ENST00000359239 846 ntBASIC17.62■□□□□ 0.41
SEMA3DO95025 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SEMA3DO95025 HMGA1P5-201ENST00000412453 271 ntBASIC17.62■□□□□ 0.41
SEMA3DO95025 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.62■□□□□ 0.41
SEMA3DO95025 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 AC009065.1-201ENST00000564055 1225 ntBASIC17.62■□□□□ 0.41
SEMA3DO95025 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.62■□□□□ 0.41
SEMA3DO95025 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.62■□□□□ 0.41
SEMA3DO95025 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SEMA3DO95025 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.62■□□□□ 0.41
SEMA3DO95025 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SEMA3DO95025 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.62■□□□□ 0.41
SEMA3DO95025 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SEMA3DO95025 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.61■□□□□ 0.41
SEMA3DO95025 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SEMA3DO95025 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SEMA3DO95025 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.61■□□□□ 0.41
SEMA3DO95025 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SEMA3DO95025 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SEMA3DO95025 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SEMA3DO95025 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms