Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.17■■□□□ 1.3
NPHP1O15259 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP1O15259 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 TEX30-205ENST00000376029 959 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC23.16■■□□□ 1.3
NPHP1O15259 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
NPHP1O15259 AP001005.1-201ENST00000571755 1248 ntBASIC23.16■■□□□ 1.3
NPHP1O15259 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC23.16■■□□□ 1.3
NPHP1O15259 CCNC-219ENST00000627680 896 ntTSL 5 BASIC23.16■■□□□ 1.3
NPHP1O15259 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
NPHP1O15259 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC23.16■■□□□ 1.3
NPHP1O15259 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP1O15259 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
NPHP1O15259 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC23.16■■□□□ 1.3
NPHP1O15259 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.16■■□□□ 1.3
NPHP1O15259 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
NPHP1O15259 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP1O15259 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP1O15259 TREX1-205ENST00000625293 1783 ntBASIC23.15■■□□□ 1.3
NPHP1O15259 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.15■■□□□ 1.3
NPHP1O15259 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP1O15259 LSM5-204ENST00000409909 740 ntTSL 2 BASIC23.15■■□□□ 1.3
NPHP1O15259 RN7SL606P-201ENST00000472779 293 ntBASIC23.15■■□□□ 1.3
NPHP1O15259 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC23.15■■□□□ 1.3
NPHP1O15259 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
NPHP1O15259 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.15■■□□□ 1.3
NPHP1O15259 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP1O15259 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP1O15259 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP1O15259 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
NPHP1O15259 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
NPHP1O15259 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NPHP1O15259 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
NPHP1O15259 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
NPHP1O15259 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
NPHP1O15259 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
NPHP1O15259 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC23.14■■□□□ 1.29
NPHP1O15259 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC23.14■■□□□ 1.29
NPHP1O15259 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC23.14■■□□□ 1.29
NPHP1O15259 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC23.14■■□□□ 1.29
NPHP1O15259 ABBA01031661.1-201ENST00000634362 1253 ntBASIC23.14■■□□□ 1.29
NPHP1O15259 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC23.14■■□□□ 1.29
NPHP1O15259 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.14■■□□□ 1.29
NPHP1O15259 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP1O15259 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
NPHP1O15259 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.13■■□□□ 1.29
NPHP1O15259 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
NPHP1O15259 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 AF238378.1-201ENST00000526806 358 ntBASIC23.13■■□□□ 1.29
NPHP1O15259 AP005901.3-202ENST00000581653 237 ntBASIC23.13■■□□□ 1.29
NPHP1O15259 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.13■■□□□ 1.29
NPHP1O15259 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP1O15259 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC23.12■■□□□ 1.29
NPHP1O15259 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.12■■□□□ 1.29
NPHP1O15259 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP1O15259 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
NPHP1O15259 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP1O15259 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP1O15259 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP1O15259 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
NPHP1O15259 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
NPHP1O15259 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC23.12■■□□□ 1.29
NPHP1O15259 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP1O15259 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
NPHP1O15259 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.12■■□□□ 1.29
NPHP1O15259 FAM197Y8-203ENST00000450145 560 ntBASIC23.12■■□□□ 1.29
NPHP1O15259 AC091607.1-201ENST00000490318 1060 ntBASIC23.12■■□□□ 1.29
NPHP1O15259 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP1O15259 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms