Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SDCBPO00560 KSR1P1-201ENST00000446298 240 ntBASIC15.69■□□□□ 0.1
SDCBPO00560 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 Z85996.1-201ENST00000494644 937 ntBASIC15.69■□□□□ 0.1
SDCBPO00560 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.69■□□□□ 0.1
SDCBPO00560 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.69■□□□□ 0.1
SDCBPO00560 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.69■□□□□ 0.1
SDCBPO00560 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.69■□□□□ 0.1
SDCBPO00560 AL353708.3-201ENST00000610272 989 ntBASIC15.69■□□□□ 0.1
SDCBPO00560 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.69■□□□□ 0.1
SDCBPO00560 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.69■□□□□ 0.1
SDCBPO00560 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SDCBPO00560 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.68■□□□□ 0.1
SDCBPO00560 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SDCBPO00560 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 AC139713.2-201ENST00000641328 2723 ntBASIC15.68■□□□□ 0.1
SDCBPO00560 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SDCBPO00560 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC15.68■□□□□ 0.1
SDCBPO00560 RPS2P4-201ENST00000476944 856 ntBASIC15.68■□□□□ 0.1
SDCBPO00560 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SDCBPO00560 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SDCBPO00560 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.68■□□□□ 0.1
SDCBPO00560 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC15.68■□□□□ 0.1
SDCBPO00560 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.68■□□□□ 0.1
SDCBPO00560 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.68■□□□□ 0.1
SDCBPO00560 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SDCBPO00560 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDCBPO00560 KRT16P1-201ENST00000399124 1418 ntBASIC15.68■□□□□ 0.1
SDCBPO00560 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.68■□□□□ 0.1
SDCBPO00560 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SDCBPO00560 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15.67■□□□□ 0.1
SDCBPO00560 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
SDCBPO00560 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.67■□□□□ 0.1
SDCBPO00560 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
SDCBPO00560 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SDCBPO00560 AC004980.1-204ENST00000429707 299 ntBASIC15.67■□□□□ 0.1
SDCBPO00560 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC15.67■□□□□ 0.1
SDCBPO00560 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.67■□□□□ 0.1
SDCBPO00560 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.67■□□□□ 0.1
SDCBPO00560 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SDCBPO00560 SPIB-206ENST00000596074 847 ntTSL 2 BASIC15.67■□□□□ 0.1
SDCBPO00560 AL359736.2-201ENST00000621992 437 ntBASIC15.67■□□□□ 0.1
SDCBPO00560 CR392000.1-201ENST00000624770 1228 ntBASIC15.67■□□□□ 0.1
SDCBPO00560 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.67■□□□□ 0.1
SDCBPO00560 LINC00896-202ENST00000609602 2128 ntBASIC15.67■□□□□ 0.1
SDCBPO00560 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms