Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC188H7C350 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CCDC188H7C350 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
CCDC188H7C350 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.17■□□□□ 0.66
CCDC188H7C350 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC188H7C350 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.17■□□□□ 0.66
CCDC188H7C350 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC188H7C350 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC188H7C350 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.17■□□□□ 0.66
CCDC188H7C350 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC188H7C350 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CCDC188H7C350 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CCDC188H7C350 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC188H7C350 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
CCDC188H7C350 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC188H7C350 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC188H7C350 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC188H7C350 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCDC188H7C350 AC006116.8-202ENST00000587620 1550 ntBASIC19.16■□□□□ 0.66
CCDC188H7C350 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CCDC188H7C350 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 KRASP1-201ENST00000407852 552 ntBASIC19.16■□□□□ 0.66
CCDC188H7C350 AC239809.2-201ENST00000415381 517 ntBASIC19.16■□□□□ 0.66
CCDC188H7C350 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.16■□□□□ 0.66
CCDC188H7C350 AC142086.2-201ENST00000569753 217 ntBASIC19.16■□□□□ 0.66
CCDC188H7C350 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CCDC188H7C350 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CCDC188H7C350 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCDC188H7C350 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 AL109923.1-201ENST00000618799 583 ntBASIC19.16■□□□□ 0.66
CCDC188H7C350 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC188H7C350 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC188H7C350 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC188H7C350 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC188H7C350 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
CCDC188H7C350 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC188H7C350 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC188H7C350 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CCDC188H7C350 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC188H7C350 MIR564-202ENST00000385049 94 ntBASIC19.15■□□□□ 0.66
CCDC188H7C350 AP003097.1-201ENST00000530657 1135 ntBASIC19.15■□□□□ 0.66
CCDC188H7C350 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC188H7C350 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CCDC188H7C350 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC188H7C350 AL023875.1-201ENST00000640777 796 ntBASIC19.15■□□□□ 0.66
CCDC188H7C350 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CCDC188H7C350 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CCDC188H7C350 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC188H7C350 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC188H7C350 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC188H7C350 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.14■□□□□ 0.66
CCDC188H7C350 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.66
CCDC188H7C350 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC188H7C350 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC188H7C350 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
CCDC188H7C350 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC188H7C350 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms