Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 ST20-AS1-201ENST00000560255 4223 ntBASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CHKB-CPT1BH3BT56 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 BANP-201ENST00000286122 2368 ntTSL 5 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SNX5-217ENST00000606557 1087 ntBASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC10.24□□□□□ -0.77
CHKB-CPT1BH3BT56 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 AP006587.3-201ENST00000525742 1516 ntBASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 TP73-202ENST00000354437 2140 ntTSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 AC010141.3-201ENST00000456659 717 ntBASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 AL499627.2-201ENST00000606283 725 ntBASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
CHKB-CPT1BH3BT56 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms