Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CPSF4LA6NMK7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 AL158047.1-201ENST00000445918 881 ntBASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CPSF4LA6NMK7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 AC096733.2-201ENST00000609937 1394 ntBASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.02■□□□□ 0.31
CPSF4LA6NMK7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 GPAT2P1-201ENST00000444924 1672 ntBASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 AL023284.2-201ENST00000405850 579 ntBASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 MCCD1P1-208ENST00000445732 328 ntBASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 AC098590.1-201ENST00000468126 897 ntBASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 NUDT16P1-203ENST00000513809 620 ntBASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 ESPNP-201ENST00000270691 2015 ntBASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 AC067852.2-201ENST00000590513 2313 ntBASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPSF4LA6NMK7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 AC097488.1-201ENST00000507834 756 ntBASIC17■□□□□ 0.31
CPSF4LA6NMK7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 AC093677.2-201ENST00000600169 1863 ntBASIC17■□□□□ 0.31
CPSF4LA6NMK7 DGCR10-201ENST00000609839 495 ntBASIC17■□□□□ 0.31
CPSF4LA6NMK7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CPSF4LA6NMK7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17■□□□□ 0.31
CPSF4LA6NMK7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms