Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.55■■□□□ 1.84
CLDND1Q9NY35 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CLDND1Q9NY35 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CLDND1Q9NY35 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CLDND1Q9NY35 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CLDND1Q9NY35 SPCS2P3-201ENST00000500401 656 ntBASIC26.54■■□□□ 1.84
CLDND1Q9NY35 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC26.54■■□□□ 1.84
CLDND1Q9NY35 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CLDND1Q9NY35 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CLDND1Q9NY35 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CLDND1Q9NY35 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CLDND1Q9NY35 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CLDND1Q9NY35 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.52■■□□□ 1.84
CLDND1Q9NY35 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CLDND1Q9NY35 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.52■■□□□ 1.84
CLDND1Q9NY35 AC093536.1-201ENST00000569153 554 ntBASIC26.52■■□□□ 1.84
CLDND1Q9NY35 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CLDND1Q9NY35 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CLDND1Q9NY35 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CLDND1Q9NY35 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CLDND1Q9NY35 GUSBP5-201ENST00000418136 578 ntBASIC26.51■■□□□ 1.83
CLDND1Q9NY35 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.51■■□□□ 1.83
CLDND1Q9NY35 AC103834.1-201ENST00000520383 144 ntBASIC26.51■■□□□ 1.83
CLDND1Q9NY35 AC025884.2-201ENST00000553429 711 ntBASIC26.51■■□□□ 1.83
CLDND1Q9NY35 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.5■■□□□ 1.83
CLDND1Q9NY35 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.49■■□□□ 1.83
CLDND1Q9NY35 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.49■■□□□ 1.83
CLDND1Q9NY35 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CLDND1Q9NY35 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.49■■□□□ 1.83
CLDND1Q9NY35 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
CLDND1Q9NY35 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.48■■□□□ 1.83
CLDND1Q9NY35 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.48■■□□□ 1.83
CLDND1Q9NY35 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.48■■□□□ 1.83
CLDND1Q9NY35 OR2A1-AS1-204ENST00000470435 602 ntBASIC26.48■■□□□ 1.83
CLDND1Q9NY35 RAP2CP1-202ENST00000605179 643 ntBASIC26.48■■□□□ 1.83
CLDND1Q9NY35 MIR6765-201ENST00000614092 87 ntBASIC26.48■■□□□ 1.83
CLDND1Q9NY35 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CLDND1Q9NY35 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
CLDND1Q9NY35 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.47■■□□□ 1.83
CLDND1Q9NY35 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.47■■□□□ 1.83
CLDND1Q9NY35 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CLDND1Q9NY35 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CLDND1Q9NY35 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CLDND1Q9NY35 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.46■■□□□ 1.83
CLDND1Q9NY35 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CLDND1Q9NY35 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.46■■□□□ 1.83
CLDND1Q9NY35 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.46■■□□□ 1.83
CLDND1Q9NY35 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CLDND1Q9NY35 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
CLDND1Q9NY35 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.83
CLDND1Q9NY35 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
CLDND1Q9NY35 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CLDND1Q9NY35 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
CLDND1Q9NY35 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
CLDND1Q9NY35 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.45■■□□□ 1.82
CLDND1Q9NY35 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.45■■□□□ 1.82
CLDND1Q9NY35 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CLDND1Q9NY35 PVT1_1.1-201ENST00000615125 194 ntBASIC26.44■■□□□ 1.82
CLDND1Q9NY35 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
CLDND1Q9NY35 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CLDND1Q9NY35 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CLDND1Q9NY35 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC26.42■■□□□ 1.82
CLDND1Q9NY35 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.42■■□□□ 1.82
CLDND1Q9NY35 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.42■■□□□ 1.82
CLDND1Q9NY35 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
CLDND1Q9NY35 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.42■■□□□ 1.82
CLDND1Q9NY35 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CLDND1Q9NY35 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CLDND1Q9NY35 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.41■■□□□ 1.82
CLDND1Q9NY35 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
CLDND1Q9NY35 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
CLDND1Q9NY35 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.4■■□□□ 1.82
CLDND1Q9NY35 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.4■■□□□ 1.82
CLDND1Q9NY35 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.4■■□□□ 1.82
CLDND1Q9NY35 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 AC018755.3-202ENST00000596210 929 ntBASIC26.39■■□□□ 1.82
CLDND1Q9NY35 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC26.39■■□□□ 1.82
CLDND1Q9NY35 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CLDND1Q9NY35 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
CLDND1Q9NY35 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.37■■□□□ 1.81
CLDND1Q9NY35 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CLDND1Q9NY35 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CLDND1Q9NY35 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CLDND1Q9NY35 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CLDND1Q9NY35 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CLDND1Q9NY35 AL356441.2-201ENST00000443009 864 ntBASIC26.36■■□□□ 1.81
CLDND1Q9NY35 MIR4508-201ENST00000584178 70 ntBASIC26.36■■□□□ 1.81
CLDND1Q9NY35 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC26.36■■□□□ 1.81
CLDND1Q9NY35 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CLDND1Q9NY35 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
CLDND1Q9NY35 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.36■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms