Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DUX4L14-201ENST00000621227 1267 ntBASIC25.76■■□□□ 1.71
PCDH9Q9HC56 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDH9Q9HC56 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
PCDH9Q9HC56 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDH9Q9HC56 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.76■■□□□ 1.71
PCDH9Q9HC56 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDH9Q9HC56 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.75■■□□□ 1.71
PCDH9Q9HC56 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
PCDH9Q9HC56 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDH9Q9HC56 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDH9Q9HC56 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.74■■□□□ 1.71
PCDH9Q9HC56 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDH9Q9HC56 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDH9Q9HC56 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
PCDH9Q9HC56 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDH9Q9HC56 MIR7108-201ENST00000614319 87 ntBASIC25.73■■□□□ 1.71
PCDH9Q9HC56 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.73■■□□□ 1.71
PCDH9Q9HC56 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
PCDH9Q9HC56 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
PCDH9Q9HC56 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
PCDH9Q9HC56 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.72■■□□□ 1.71
PCDH9Q9HC56 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.72■■□□□ 1.71
PCDH9Q9HC56 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.72■■□□□ 1.71
PCDH9Q9HC56 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
PCDH9Q9HC56 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDH9Q9HC56 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L13-201ENST00000554103 1267 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L15-201ENST00000611059 1267 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L23-201ENST00000615195 1269 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L24-201ENST00000617576 1269 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L22-201ENST00000618238 1269 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L20-201ENST00000619712 1269 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L21-201ENST00000622058 1269 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L10-201ENST00000622460 1267 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 DUX4L25-201ENST00000624915 1269 ntBASIC25.71■■□□□ 1.71
PCDH9Q9HC56 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDH9Q9HC56 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.7■■□□□ 1.71
PCDH9Q9HC56 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDH9Q9HC56 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDH9Q9HC56 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDH9Q9HC56 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDH9Q9HC56 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.69■■□□□ 1.7
PCDH9Q9HC56 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.69■■□□□ 1.7
PCDH9Q9HC56 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDH9Q9HC56 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.69■■□□□ 1.7
PCDH9Q9HC56 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
PCDH9Q9HC56 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDH9Q9HC56 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.68■■□□□ 1.7
PCDH9Q9HC56 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
PCDH9Q9HC56 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
PCDH9Q9HC56 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDH9Q9HC56 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.68■■□□□ 1.7
PCDH9Q9HC56 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDH9Q9HC56 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDH9Q9HC56 AC110285.7-201ENST00000624417 1536 ntBASIC25.67■■□□□ 1.7
PCDH9Q9HC56 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PCDH9Q9HC56 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.66■■□□□ 1.7
PCDH9Q9HC56 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.66■■□□□ 1.7
PCDH9Q9HC56 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
PCDH9Q9HC56 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDH9Q9HC56 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.65■■□□□ 1.7
PCDH9Q9HC56 AC091060.1-201ENST00000623524 1766 ntBASIC25.64■■□□□ 1.7
PCDH9Q9HC56 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.64■■□□□ 1.7
PCDH9Q9HC56 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.64■■□□□ 1.7
PCDH9Q9HC56 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.64■■□□□ 1.7
PCDH9Q9HC56 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
PCDH9Q9HC56 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
PCDH9Q9HC56 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.63■■□□□ 1.69
PCDH9Q9HC56 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PCDH9Q9HC56 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
PCDH9Q9HC56 AL449106.1-201ENST00000608517 1980 ntBASIC25.63■■□□□ 1.69
PCDH9Q9HC56 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.62■■□□□ 1.69
PCDH9Q9HC56 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.62■■□□□ 1.69
PCDH9Q9HC56 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDH9Q9HC56 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PCDH9Q9HC56 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDH9Q9HC56 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDH9Q9HC56 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDH9Q9HC56 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.6■■□□□ 1.69
PCDH9Q9HC56 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.6■■□□□ 1.69
PCDH9Q9HC56 CR559946.2-201ENST00000623684 991 ntBASIC25.6■■□□□ 1.69
PCDH9Q9HC56 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDH9Q9HC56 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PCDH9Q9HC56 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PCDH9Q9HC56 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.59■■□□□ 1.69
PCDH9Q9HC56 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
PCDH9Q9HC56 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDH9Q9HC56 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDH9Q9HC56 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.58■■□□□ 1.69
PCDH9Q9HC56 MIR3648-2-201ENST00000581792 180 ntBASIC25.58■■□□□ 1.69
PCDH9Q9HC56 MIR3648-1-201ENST00000615959 180 ntBASIC25.58■■□□□ 1.69
PCDH9Q9HC56 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.58■■□□□ 1.69
PCDH9Q9HC56 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PCDH9Q9HC56 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
PCDH9Q9HC56 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
PCDH9Q9HC56 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
PCDH9Q9HC56 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.57■■□□□ 1.68
PCDH9Q9HC56 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
PCDH9Q9HC56 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.57■■□□□ 1.68
PCDH9Q9HC56 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms