Protein–RNA interactions for Protein: Q8NDP4

ZNF439, Zinc finger protein 439, humanhuman

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF439Q8NDP4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
ZNF439Q8NDP4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF439Q8NDP4 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF439Q8NDP4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF439Q8NDP4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF439Q8NDP4 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.52■□□□□ 0.87
ZNF439Q8NDP4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF439Q8NDP4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L13-201ENST00000554103 1267 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L15-201ENST00000611059 1267 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L23-201ENST00000615195 1269 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L24-201ENST00000617576 1269 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L22-201ENST00000618238 1269 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L20-201ENST00000619712 1269 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L21-201ENST00000622058 1269 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L10-201ENST00000622460 1267 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 DUX4L25-201ENST00000624915 1269 ntBASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF439Q8NDP4 ZNRF2P2-203ENST00000454624 420 ntBASIC20.5■□□□□ 0.87
ZNF439Q8NDP4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF439Q8NDP4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF439Q8NDP4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF439Q8NDP4 DUX4L11-201ENST00000611504 1267 ntBASIC20.49■□□□□ 0.87
ZNF439Q8NDP4 DUX4L12-201ENST00000614593 1267 ntBASIC20.49■□□□□ 0.87
ZNF439Q8NDP4 DUX4L14-201ENST00000621227 1267 ntBASIC20.49■□□□□ 0.87
ZNF439Q8NDP4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF439Q8NDP4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF439Q8NDP4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF439Q8NDP4 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF439Q8NDP4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
ZNF439Q8NDP4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF439Q8NDP4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.47■□□□□ 0.87
ZNF439Q8NDP4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF439Q8NDP4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.46■□□□□ 0.87
ZNF439Q8NDP4 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
ZNF439Q8NDP4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
ZNF439Q8NDP4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF439Q8NDP4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.45■□□□□ 0.86
ZNF439Q8NDP4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.45■□□□□ 0.86
ZNF439Q8NDP4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF439Q8NDP4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF439Q8NDP4 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.44■□□□□ 0.86
ZNF439Q8NDP4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF439Q8NDP4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF439Q8NDP4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF439Q8NDP4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF439Q8NDP4 ABHD17AP4-201ENST00000411545 909 ntBASIC20.43■□□□□ 0.86
ZNF439Q8NDP4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF439Q8NDP4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF439Q8NDP4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF439Q8NDP4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF439Q8NDP4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF439Q8NDP4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF439Q8NDP4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
ZNF439Q8NDP4 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF439Q8NDP4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF439Q8NDP4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.39■□□□□ 0.86
ZNF439Q8NDP4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF439Q8NDP4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF439Q8NDP4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF439Q8NDP4 AL449106.1-201ENST00000608517 1980 ntBASIC20.37■□□□□ 0.85
ZNF439Q8NDP4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF439Q8NDP4 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF439Q8NDP4 AC008813.1-201ENST00000536597 885 ntBASIC20.37■□□□□ 0.85
ZNF439Q8NDP4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.37■□□□□ 0.85
ZNF439Q8NDP4 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF439Q8NDP4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF439Q8NDP4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.36■□□□□ 0.85
ZNF439Q8NDP4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.36■□□□□ 0.85
ZNF439Q8NDP4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms