Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC39.63■■■■□ 3.93
VPS8Q8N3P4 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC39.63■■■■□ 3.93
VPS8Q8N3P4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC39.62■■■■□ 3.93
VPS8Q8N3P4 AC092296.2-201ENST00000589470 999 ntBASIC39.62■■■■□ 3.93
VPS8Q8N3P4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
VPS8Q8N3P4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC39.6■■■■□ 3.93
VPS8Q8N3P4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
VPS8Q8N3P4 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
VPS8Q8N3P4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
VPS8Q8N3P4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC39.58■■■■□ 3.93
VPS8Q8N3P4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC39.58■■■■□ 3.93
VPS8Q8N3P4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC39.58■■■■□ 3.93
VPS8Q8N3P4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC39.58■■■■□ 3.93
VPS8Q8N3P4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC39.57■■■■□ 3.93
VPS8Q8N3P4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC39.57■■■■□ 3.93
VPS8Q8N3P4 RARRES2P2-201ENST00000394842 485 ntBASIC39.57■■■■□ 3.92
VPS8Q8N3P4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC39.57■■■■□ 3.92
VPS8Q8N3P4 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC39.57■■■■□ 3.92
VPS8Q8N3P4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC39.56■■■■□ 3.92
VPS8Q8N3P4 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC39.56■■■■□ 3.92
VPS8Q8N3P4 AC022413.1-201ENST00000624602 984 ntBASIC39.56■■■■□ 3.92
VPS8Q8N3P4 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
VPS8Q8N3P4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC39.56■■■■□ 3.92
VPS8Q8N3P4 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
VPS8Q8N3P4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
VPS8Q8N3P4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC39.54■■■■□ 3.92
VPS8Q8N3P4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
VPS8Q8N3P4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC39.52■■■■□ 3.92
VPS8Q8N3P4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC39.52■■■■□ 3.92
VPS8Q8N3P4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC39.52■■■■□ 3.92
VPS8Q8N3P4 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC39.51■■■■□ 3.92
VPS8Q8N3P4 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC39.51■■■■□ 3.91
VPS8Q8N3P4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC39.51■■■■□ 3.91
VPS8Q8N3P4 RNF126P1-201ENST00000567452 1320 ntBASIC39.5■■■■□ 3.91
VPS8Q8N3P4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC39.5■■■■□ 3.91
VPS8Q8N3P4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC39.5■■■■□ 3.91
VPS8Q8N3P4 LINC01003-201ENST00000564834 1764 ntBASIC39.49■■■■□ 3.91
VPS8Q8N3P4 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
VPS8Q8N3P4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC39.49■■■■□ 3.91
VPS8Q8N3P4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC39.48■■■■□ 3.91
VPS8Q8N3P4 SHF-206ENST00000560471 2499 ntTSL 5 BASIC39.46■■■■□ 3.91
VPS8Q8N3P4 AC126177.7-201ENST00000547904 679 ntBASIC39.46■■■■□ 3.91
VPS8Q8N3P4 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
VPS8Q8N3P4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
VPS8Q8N3P4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC39.44■■■■□ 3.9
VPS8Q8N3P4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC39.43■■■■□ 3.9
VPS8Q8N3P4 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
VPS8Q8N3P4 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC39.42■■■■□ 3.9
VPS8Q8N3P4 AC142086.6-201ENST00000621154 1765 ntBASIC39.42■■■■□ 3.9
VPS8Q8N3P4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC39.42■■■■□ 3.9
VPS8Q8N3P4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC39.42■■■■□ 3.9
VPS8Q8N3P4 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC39.41■■■■□ 3.9
VPS8Q8N3P4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
VPS8Q8N3P4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC39.4■■■■□ 3.9
VPS8Q8N3P4 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
VPS8Q8N3P4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
VPS8Q8N3P4 AL359258.2-201ENST00000564063 1566 ntBASIC39.4■■■■□ 3.9
VPS8Q8N3P4 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC39.39■■■■□ 3.9
VPS8Q8N3P4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC39.39■■■■□ 3.9
VPS8Q8N3P4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC39.38■■■■□ 3.9
VPS8Q8N3P4 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC39.38■■■■□ 3.89
VPS8Q8N3P4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC39.38■■■■□ 3.89
VPS8Q8N3P4 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC39.38■■■■□ 3.89
VPS8Q8N3P4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
VPS8Q8N3P4 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
VPS8Q8N3P4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC39.37■■■■□ 3.89
VPS8Q8N3P4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC39.36■■■■□ 3.89
VPS8Q8N3P4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
VPS8Q8N3P4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
VPS8Q8N3P4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC39.35■■■■□ 3.89
VPS8Q8N3P4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC39.35■■■■□ 3.89
VPS8Q8N3P4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC39.35■■■■□ 3.89
VPS8Q8N3P4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
VPS8Q8N3P4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC39.35■■■■□ 3.89
VPS8Q8N3P4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
VPS8Q8N3P4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC39.34■■■■□ 3.89
VPS8Q8N3P4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC39.34■■■■□ 3.89
VPS8Q8N3P4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC39.34■■■■□ 3.89
VPS8Q8N3P4 WHAMMP3-201ENST00000611636 1609 ntBASIC39.33■■■■□ 3.89
VPS8Q8N3P4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
VPS8Q8N3P4 BX255925.1-201ENST00000566954 1854 ntBASIC39.33■■■■□ 3.89
VPS8Q8N3P4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
VPS8Q8N3P4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
VPS8Q8N3P4 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
VPS8Q8N3P4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
VPS8Q8N3P4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC39.31■■■■□ 3.88
VPS8Q8N3P4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC39.31■■■■□ 3.88
VPS8Q8N3P4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC39.31■■■■□ 3.88
VPS8Q8N3P4 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
VPS8Q8N3P4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
VPS8Q8N3P4 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC39.3■■■■□ 3.88
VPS8Q8N3P4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC39.29■■■■□ 3.88
VPS8Q8N3P4 ECEL1P2-201ENST00000461596 1295 ntBASIC39.29■■■■□ 3.88
VPS8Q8N3P4 ABHD17AP5-201ENST00000580133 923 ntBASIC39.28■■■■□ 3.88
VPS8Q8N3P4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC39.28■■■■□ 3.88
VPS8Q8N3P4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC39.27■■■■□ 3.88
VPS8Q8N3P4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC39.27■■■■□ 3.88
VPS8Q8N3P4 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC39.27■■■■□ 3.88
VPS8Q8N3P4 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC39.26■■■■□ 3.88
VPS8Q8N3P4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC39.26■■■■□ 3.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms