Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC31.45■■■□□ 2.63
UBE3BQ7Z3V4 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.62
UBE3BQ7Z3V4 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
UBE3BQ7Z3V4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
UBE3BQ7Z3V4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.44■■■□□ 2.62
UBE3BQ7Z3V4 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
UBE3BQ7Z3V4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
UBE3BQ7Z3V4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
UBE3BQ7Z3V4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
UBE3BQ7Z3V4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
UBE3BQ7Z3V4 AL359258.2-201ENST00000564063 1566 ntBASIC31.43■■■□□ 2.62
UBE3BQ7Z3V4 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
UBE3BQ7Z3V4 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
UBE3BQ7Z3V4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.42■■■□□ 2.62
UBE3BQ7Z3V4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
UBE3BQ7Z3V4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
UBE3BQ7Z3V4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
UBE3BQ7Z3V4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
UBE3BQ7Z3V4 ECEL1P2-201ENST00000461596 1295 ntBASIC31.41■■■□□ 2.62
UBE3BQ7Z3V4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
UBE3BQ7Z3V4 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
UBE3BQ7Z3V4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
UBE3BQ7Z3V4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
UBE3BQ7Z3V4 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
UBE3BQ7Z3V4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
UBE3BQ7Z3V4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
UBE3BQ7Z3V4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
UBE3BQ7Z3V4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
UBE3BQ7Z3V4 AC018358.1-201ENST00000631079 1402 ntBASIC31.39■■■□□ 2.62
UBE3BQ7Z3V4 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
UBE3BQ7Z3V4 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
UBE3BQ7Z3V4 DRD5P2-201ENST00000421395 2012 ntBASIC31.38■■■□□ 2.61
UBE3BQ7Z3V4 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
UBE3BQ7Z3V4 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
UBE3BQ7Z3V4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.37■■■□□ 2.61
UBE3BQ7Z3V4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
UBE3BQ7Z3V4 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
UBE3BQ7Z3V4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
UBE3BQ7Z3V4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC31.36■■■□□ 2.61
UBE3BQ7Z3V4 PROC-203ENST00000409048 1586 ntTSL 5 BASIC31.35■■■□□ 2.61
UBE3BQ7Z3V4 NTF6A-201ENST00000591175 560 ntBASIC31.35■■■□□ 2.61
UBE3BQ7Z3V4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.35■■■□□ 2.61
UBE3BQ7Z3V4 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
UBE3BQ7Z3V4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.34■■■□□ 2.61
UBE3BQ7Z3V4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
UBE3BQ7Z3V4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
UBE3BQ7Z3V4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.34■■■□□ 2.61
UBE3BQ7Z3V4 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
UBE3BQ7Z3V4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.34■■■□□ 2.61
UBE3BQ7Z3V4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
UBE3BQ7Z3V4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
UBE3BQ7Z3V4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.32■■■□□ 2.6
UBE3BQ7Z3V4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.32■■■□□ 2.6
UBE3BQ7Z3V4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.31■■■□□ 2.6
UBE3BQ7Z3V4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.31■■■□□ 2.6
UBE3BQ7Z3V4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.31■■■□□ 2.6
UBE3BQ7Z3V4 U85056.1-201ENST00000616429 682 ntBASIC31.31■■■□□ 2.6
UBE3BQ7Z3V4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
UBE3BQ7Z3V4 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
UBE3BQ7Z3V4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC31.3■■■□□ 2.6
UBE3BQ7Z3V4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
UBE3BQ7Z3V4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
UBE3BQ7Z3V4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.29■■■□□ 2.6
UBE3BQ7Z3V4 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
UBE3BQ7Z3V4 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
UBE3BQ7Z3V4 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
UBE3BQ7Z3V4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
UBE3BQ7Z3V4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
UBE3BQ7Z3V4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.26■■■□□ 2.59
UBE3BQ7Z3V4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
UBE3BQ7Z3V4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.26■■■□□ 2.59
UBE3BQ7Z3V4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
UBE3BQ7Z3V4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.23■■■□□ 2.59
UBE3BQ7Z3V4 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
UBE3BQ7Z3V4 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
UBE3BQ7Z3V4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.22■■■□□ 2.59
UBE3BQ7Z3V4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
UBE3BQ7Z3V4 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
UBE3BQ7Z3V4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
UBE3BQ7Z3V4 AC007029.1-201ENST00000604183 313 ntBASIC31.21■■■□□ 2.59
UBE3BQ7Z3V4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
UBE3BQ7Z3V4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.2■■■□□ 2.59
UBE3BQ7Z3V4 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
UBE3BQ7Z3V4 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
UBE3BQ7Z3V4 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
UBE3BQ7Z3V4 SMPD5-203ENST00000639008 1464 ntBASIC31.19■■■□□ 2.58
UBE3BQ7Z3V4 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.19■■■□□ 2.58
UBE3BQ7Z3V4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
UBE3BQ7Z3V4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
UBE3BQ7Z3V4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.18■■■□□ 2.58
UBE3BQ7Z3V4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
UBE3BQ7Z3V4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.17■■■□□ 2.58
UBE3BQ7Z3V4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
UBE3BQ7Z3V4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
UBE3BQ7Z3V4 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
UBE3BQ7Z3V4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.16■■■□□ 2.58
UBE3BQ7Z3V4 AC012354.3-201ENST00000623734 483 ntBASIC31.16■■■□□ 2.58
UBE3BQ7Z3V4 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
UBE3BQ7Z3V4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.16■■■□□ 2.58
UBE3BQ7Z3V4 KRT18P60-201ENST00000312876 1297 ntBASIC31.15■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms