Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
HMGCS2P54868 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
HMGCS2P54868 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
HMGCS2P54868 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
HMGCS2P54868 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
HMGCS2P54868 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.25■■■□□ 2.27
HMGCS2P54868 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC29.24■■■□□ 2.27
HMGCS2P54868 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
HMGCS2P54868 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
HMGCS2P54868 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
HMGCS2P54868 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.24■■■□□ 2.27
HMGCS2P54868 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
HMGCS2P54868 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC29.23■■■□□ 2.27
HMGCS2P54868 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC29.23■■■□□ 2.27
HMGCS2P54868 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC29.23■■■□□ 2.27
HMGCS2P54868 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
HMGCS2P54868 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC29.22■■■□□ 2.27
HMGCS2P54868 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC29.21■■■□□ 2.27
HMGCS2P54868 AC026202.3-201ENST00000600805 1127 ntBASIC29.21■■■□□ 2.27
HMGCS2P54868 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC29.21■■■□□ 2.27
HMGCS2P54868 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC29.21■■■□□ 2.27
HMGCS2P54868 AL139393.2-201ENST00000608721 2025 ntBASIC29.2■■■□□ 2.27
HMGCS2P54868 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.26
HMGCS2P54868 ABCB10P3-201ENST00000561950 2166 ntBASIC29.2■■■□□ 2.26
HMGCS2P54868 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.2■■■□□ 2.26
HMGCS2P54868 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC29.2■■■□□ 2.26
HMGCS2P54868 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC29.19■■■□□ 2.26
HMGCS2P54868 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC29.19■■■□□ 2.26
HMGCS2P54868 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC29.19■■■□□ 2.26
HMGCS2P54868 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
HMGCS2P54868 AC025884.2-201ENST00000553429 711 ntBASIC29.19■■■□□ 2.26
HMGCS2P54868 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC29.19■■■□□ 2.26
HMGCS2P54868 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
HMGCS2P54868 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
HMGCS2P54868 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.18■■■□□ 2.26
HMGCS2P54868 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
HMGCS2P54868 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.17■■■□□ 2.26
HMGCS2P54868 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
HMGCS2P54868 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
HMGCS2P54868 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
HMGCS2P54868 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
HMGCS2P54868 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
HMGCS2P54868 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
HMGCS2P54868 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC29.15■■■□□ 2.26
HMGCS2P54868 HES4-204ENST00000484667 667 ntTSL 3 BASIC29.14■■■□□ 2.26
HMGCS2P54868 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
HMGCS2P54868 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
HMGCS2P54868 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
HMGCS2P54868 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC29.13■■■□□ 2.25
HMGCS2P54868 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.12■■■□□ 2.25
HMGCS2P54868 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
HMGCS2P54868 RP9P-202ENST00000450133 1212 ntBASIC29.12■■■□□ 2.25
HMGCS2P54868 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC29.12■■■□□ 2.25
HMGCS2P54868 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC29.11■■■□□ 2.25
HMGCS2P54868 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
HMGCS2P54868 AC093536.1-201ENST00000569153 554 ntBASIC29.11■■■□□ 2.25
HMGCS2P54868 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGCS2P54868 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGCS2P54868 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGCS2P54868 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGCS2P54868 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGCS2P54868 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
HMGCS2P54868 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC29.09■■■□□ 2.25
HMGCS2P54868 DUX4L9-201ENST00000449051 1259 ntBASIC29.09■■■□□ 2.25
HMGCS2P54868 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC29.09■■■□□ 2.25
HMGCS2P54868 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
HMGCS2P54868 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
HMGCS2P54868 RAP2CP1-202ENST00000605179 643 ntBASIC29.07■■■□□ 2.24
HMGCS2P54868 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
HMGCS2P54868 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC29.06■■■□□ 2.24
HMGCS2P54868 AP002414.2-202ENST00000590929 1450 ntBASIC29.06■■■□□ 2.24
HMGCS2P54868 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC29.06■■■□□ 2.24
HMGCS2P54868 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC29.06■■■□□ 2.24
HMGCS2P54868 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
HMGCS2P54868 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC29.05■■■□□ 2.24
HMGCS2P54868 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
HMGCS2P54868 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC29.05■■■□□ 2.24
HMGCS2P54868 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC29.05■■■□□ 2.24
HMGCS2P54868 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC29.05■■■□□ 2.24
HMGCS2P54868 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC29.05■■■□□ 2.24
HMGCS2P54868 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
HMGCS2P54868 SPCS2P3-201ENST00000500401 656 ntBASIC29.04■■■□□ 2.24
HMGCS2P54868 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC29.04■■■□□ 2.24
HMGCS2P54868 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
HMGCS2P54868 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
HMGCS2P54868 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC29.03■■■□□ 2.24
HMGCS2P54868 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC29.03■■■□□ 2.24
HMGCS2P54868 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC29.02■■■□□ 2.24
HMGCS2P54868 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.02■■■□□ 2.24
HMGCS2P54868 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
HMGCS2P54868 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
HMGCS2P54868 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
HMGCS2P54868 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
HMGCS2P54868 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC29■■■□□ 2.23
HMGCS2P54868 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29■■■□□ 2.23
HMGCS2P54868 PFN2-211ENST00000489155 636 ntTSL 4 BASIC29■■■□□ 2.23
HMGCS2P54868 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC29■■■□□ 2.23
HMGCS2P54868 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
HMGCS2P54868 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.99■■■□□ 2.23
HMGCS2P54868 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms