Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL4A2P08572 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL4A2P08572 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL4A2P08572 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC25.72■■□□□ 1.71
COL4A2P08572 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
COL4A2P08572 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
COL4A2P08572 RAP2CP1-202ENST00000605179 643 ntBASIC25.72■■□□□ 1.71
COL4A2P08572 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC25.72■■□□□ 1.71
COL4A2P08572 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
COL4A2P08572 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC25.71■■□□□ 1.71
COL4A2P08572 SPCS2P3-201ENST00000500401 656 ntBASIC25.71■■□□□ 1.71
COL4A2P08572 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL4A2P08572 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
COL4A2P08572 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.71■■□□□ 1.71
COL4A2P08572 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.71
COL4A2P08572 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
COL4A2P08572 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.7■■□□□ 1.7
COL4A2P08572 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.7■■□□□ 1.7
COL4A2P08572 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL4A2P08572 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL4A2P08572 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL4A2P08572 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC25.69■■□□□ 1.7
COL4A2P08572 AC026202.3-201ENST00000600805 1127 ntBASIC25.69■■□□□ 1.7
COL4A2P08572 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.69■■□□□ 1.7
COL4A2P08572 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL4A2P08572 SMPD5-203ENST00000639008 1464 ntBASIC25.68■■□□□ 1.7
COL4A2P08572 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL4A2P08572 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A2P08572 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A2P08572 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A2P08572 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.66■■□□□ 1.7
COL4A2P08572 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
COL4A2P08572 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A2P08572 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A2P08572 DUX4L18-201ENST00000553347 1267 ntBASIC25.66■■□□□ 1.7
COL4A2P08572 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.66■■□□□ 1.7
COL4A2P08572 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A2P08572 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A2P08572 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.65■■□□□ 1.7
COL4A2P08572 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.65■■□□□ 1.7
COL4A2P08572 AL035685.1-201ENST00000636663 812 ntBASIC25.65■■□□□ 1.7
COL4A2P08572 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.64■■□□□ 1.7
COL4A2P08572 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.64■■□□□ 1.7
COL4A2P08572 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
COL4A2P08572 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.64■■□□□ 1.7
COL4A2P08572 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.63■■□□□ 1.69
COL4A2P08572 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.63■■□□□ 1.69
COL4A2P08572 AL359258.2-201ENST00000564063 1566 ntBASIC25.63■■□□□ 1.69
COL4A2P08572 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A2P08572 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A2P08572 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A2P08572 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A2P08572 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
COL4A2P08572 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.62■■□□□ 1.69
COL4A2P08572 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
COL4A2P08572 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.61■■□□□ 1.69
COL4A2P08572 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.61■■□□□ 1.69
COL4A2P08572 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
COL4A2P08572 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A2P08572 RP9P-202ENST00000450133 1212 ntBASIC25.6■■□□□ 1.69
COL4A2P08572 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
COL4A2P08572 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
COL4A2P08572 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A2P08572 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.6■■□□□ 1.69
COL4A2P08572 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A2P08572 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
COL4A2P08572 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
COL4A2P08572 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.58■■□□□ 1.69
COL4A2P08572 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC25.58■■□□□ 1.69
COL4A2P08572 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL4A2P08572 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
COL4A2P08572 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.57■■□□□ 1.68
COL4A2P08572 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC25.57■■□□□ 1.68
COL4A2P08572 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A2P08572 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL4A2P08572 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL4A2P08572 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.55■■□□□ 1.68
COL4A2P08572 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.55■■□□□ 1.68
COL4A2P08572 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
COL4A2P08572 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.54■■□□□ 1.68
COL4A2P08572 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
COL4A2P08572 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL4A2P08572 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.54■■□□□ 1.68
COL4A2P08572 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL4A2P08572 AC009299.2-201ENST00000482477 511 ntBASIC25.54■■□□□ 1.68
COL4A2P08572 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL4A2P08572 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL4A2P08572 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
COL4A2P08572 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL4A2P08572 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL4A2P08572 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL4A2P08572 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.51■■□□□ 1.68
COL4A2P08572 PVT1_1.1-201ENST00000615125 194 ntBASIC25.51■■□□□ 1.68
COL4A2P08572 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
COL4A2P08572 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.51■■□□□ 1.67
COL4A2P08572 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL4A2P08572 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC25.5■■□□□ 1.67
COL4A2P08572 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL4A2P08572 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC25.5■■□□□ 1.67
COL4A2P08572 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.49■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms