Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC30.5■■■□□ 2.47
COL1A1P02452 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
COL1A1P02452 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
COL1A1P02452 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL1A1P02452 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
COL1A1P02452 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL1A1P02452 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
COL1A1P02452 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
COL1A1P02452 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.5■■■□□ 2.47
COL1A1P02452 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.5■■■□□ 2.47
COL1A1P02452 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL1A1P02452 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL1A1P02452 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
COL1A1P02452 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.48■■■□□ 2.47
COL1A1P02452 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
COL1A1P02452 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC30.47■■■□□ 2.47
COL1A1P02452 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL1A1P02452 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL1A1P02452 KRT18P60-201ENST00000312876 1297 ntBASIC30.47■■■□□ 2.47
COL1A1P02452 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC30.47■■■□□ 2.47
COL1A1P02452 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL1A1P02452 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
COL1A1P02452 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
COL1A1P02452 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC30.45■■■□□ 2.47
COL1A1P02452 TSPY13P-201ENST00000338964 914 ntBASIC30.45■■■□□ 2.47
COL1A1P02452 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC30.45■■■□□ 2.47
COL1A1P02452 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL1A1P02452 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL1A1P02452 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL1A1P02452 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
COL1A1P02452 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.44■■■□□ 2.46
COL1A1P02452 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL1A1P02452 ECEL1P2-201ENST00000461596 1295 ntBASIC30.44■■■□□ 2.46
COL1A1P02452 AC126177.7-201ENST00000547904 679 ntBASIC30.44■■■□□ 2.46
COL1A1P02452 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL1A1P02452 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.42■■■□□ 2.46
COL1A1P02452 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
COL1A1P02452 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
COL1A1P02452 AC139426.1-201ENST00000568218 2529 ntBASIC30.41■■■□□ 2.46
COL1A1P02452 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
COL1A1P02452 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.4■■■□□ 2.46
COL1A1P02452 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL1A1P02452 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.39■■■□□ 2.46
COL1A1P02452 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL1A1P02452 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
COL1A1P02452 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL1A1P02452 AL359258.2-201ENST00000564063 1566 ntBASIC30.39■■■□□ 2.46
COL1A1P02452 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL1A1P02452 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL1A1P02452 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.39■■■□□ 2.46
COL1A1P02452 AC004987.1-201ENST00000428627 508 ntBASIC30.38■■■□□ 2.45
COL1A1P02452 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL1A1P02452 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.38■■■□□ 2.45
COL1A1P02452 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL1A1P02452 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL1A1P02452 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL1A1P02452 ATP5G2P3-201ENST00000429083 425 ntBASIC30.38■■■□□ 2.45
COL1A1P02452 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC30.38■■■□□ 2.45
COL1A1P02452 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL1A1P02452 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC30.37■■■□□ 2.45
COL1A1P02452 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL1A1P02452 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
COL1A1P02452 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
COL1A1P02452 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
COL1A1P02452 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL1A1P02452 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL1A1P02452 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
COL1A1P02452 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC30.35■■■□□ 2.45
COL1A1P02452 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC30.34■■■□□ 2.45
COL1A1P02452 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL1A1P02452 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.34■■■□□ 2.45
COL1A1P02452 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.33■■■□□ 2.45
COL1A1P02452 AC007029.1-201ENST00000604183 313 ntBASIC30.33■■■□□ 2.45
COL1A1P02452 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL1A1P02452 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL1A1P02452 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL1A1P02452 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
COL1A1P02452 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
COL1A1P02452 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL1A1P02452 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL1A1P02452 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC30.31■■■□□ 2.44
COL1A1P02452 DRD5P2-201ENST00000421395 2012 ntBASIC30.31■■■□□ 2.44
COL1A1P02452 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL1A1P02452 GUK1-208ENST00000366728 842 ntTSL 2 BASIC30.31■■■□□ 2.44
COL1A1P02452 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
COL1A1P02452 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL1A1P02452 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL1A1P02452 AC025884.2-201ENST00000553429 711 ntBASIC30.3■■■□□ 2.44
COL1A1P02452 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC30.29■■■□□ 2.44
COL1A1P02452 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL1A1P02452 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC30.29■■■□□ 2.44
COL1A1P02452 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL1A1P02452 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
COL1A1P02452 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL1A1P02452 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC30.28■■■□□ 2.44
COL1A1P02452 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.28■■■□□ 2.44
COL1A1P02452 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL1A1P02452 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.27■■■□□ 2.44
COL1A1P02452 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
COL1A1P02452 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms