Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.37■■□□□ 1.17
UPK3AO75631 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
UPK3AO75631 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.37■■□□□ 1.17
UPK3AO75631 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
UPK3AO75631 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
UPK3AO75631 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
UPK3AO75631 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.36■■□□□ 1.17
UPK3AO75631 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
UPK3AO75631 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
UPK3AO75631 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
UPK3AO75631 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.36■■□□□ 1.17
UPK3AO75631 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
UPK3AO75631 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
UPK3AO75631 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
UPK3AO75631 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
UPK3AO75631 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC22.34■■□□□ 1.17
UPK3AO75631 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
UPK3AO75631 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
UPK3AO75631 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
UPK3AO75631 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPK3AO75631 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC22.32■■□□□ 1.16
UPK3AO75631 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPK3AO75631 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.32■■□□□ 1.16
UPK3AO75631 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
UPK3AO75631 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
UPK3AO75631 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
UPK3AO75631 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
UPK3AO75631 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UPK3AO75631 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.3■■□□□ 1.16
UPK3AO75631 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.3■■□□□ 1.16
UPK3AO75631 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.3■■□□□ 1.16
UPK3AO75631 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
UPK3AO75631 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UPK3AO75631 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.29■■□□□ 1.16
UPK3AO75631 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
UPK3AO75631 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
UPK3AO75631 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.28■■□□□ 1.16
UPK3AO75631 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UPK3AO75631 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
UPK3AO75631 METRNL-202ENST00000570778 967 ntTSL 5 BASIC22.28■■□□□ 1.16
UPK3AO75631 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UPK3AO75631 AC018358.1-201ENST00000631079 1402 ntBASIC22.28■■□□□ 1.16
UPK3AO75631 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UPK3AO75631 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.28■■□□□ 1.16
UPK3AO75631 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPK3AO75631 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPK3AO75631 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UPK3AO75631 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.27■■□□□ 1.16
UPK3AO75631 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPK3AO75631 HLA-V-202ENST00000446817 847 ntBASIC22.26■■□□□ 1.15
UPK3AO75631 AC008813.1-201ENST00000536597 885 ntBASIC22.26■■□□□ 1.15
UPK3AO75631 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPK3AO75631 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPK3AO75631 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPK3AO75631 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.24■■□□□ 1.15
UPK3AO75631 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPK3AO75631 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
UPK3AO75631 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPK3AO75631 MIR639-201ENST00000384974 98 ntBASIC22.24■■□□□ 1.15
UPK3AO75631 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.24■■□□□ 1.15
UPK3AO75631 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPK3AO75631 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPK3AO75631 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPK3AO75631 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
UPK3AO75631 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UPK3AO75631 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UPK3AO75631 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.23■■□□□ 1.15
UPK3AO75631 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UPK3AO75631 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UPK3AO75631 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC22.22■■□□□ 1.15
UPK3AO75631 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
UPK3AO75631 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.22■■□□□ 1.15
UPK3AO75631 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
UPK3AO75631 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
UPK3AO75631 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.21■■□□□ 1.15
UPK3AO75631 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPK3AO75631 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.21■■□□□ 1.15
UPK3AO75631 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
UPK3AO75631 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPK3AO75631 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
UPK3AO75631 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
UPK3AO75631 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
UPK3AO75631 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.2■■□□□ 1.14
UPK3AO75631 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
UPK3AO75631 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
UPK3AO75631 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
UPK3AO75631 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPK3AO75631 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
UPK3AO75631 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
UPK3AO75631 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPK3AO75631 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPK3AO75631 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
UPK3AO75631 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
UPK3AO75631 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
UPK3AO75631 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.17■■□□□ 1.14
UPK3AO75631 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.17■■□□□ 1.14
UPK3AO75631 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
UPK3AO75631 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
UPK3AO75631 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
UPK3AO75631 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms